Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq556 87.8 3e-12
seq537 84.2 4e-11
seq218 84.2 4e-11
>seq556
Length=21056529
Score = 87.8 bits (96), Expect = 3e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| ||||| |||| || ||| | || || || ||||||||||| ||||| |||| ||
Sbjct 17129491 GGTGAGAGAGTGGTTGCTTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 17129550
Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815
| || || ||||| ||| ||| || |||||| ||||| || ||||| || |||||
Sbjct 17129551 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 17129610
Query 42816 ATCAGCAGGGACGAGG 42831
|| ||||| || ||||
Sbjct 17129611 ATTAGCAGAGATGAGG 17129626
>seq537
Length=7949590
Score = 84.2 bits (92), Expect = 4e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067
|| |||||| || || || ||||||||||| ||| ||||| || | | |||||| ||
Sbjct 7422291 CTTCATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTAGCTCGCTGCTCTTC 7422232
Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127
|||||||||||| | | || | ||| ||||||| ||| | ||||| |||||||
Sbjct 7422231 TTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAG 7422172
Query 245128 GTAGACAGCGAGGGCGCCGGG 245148
||||| || | || |||||
Sbjct 7422171 GTAGATGGCAAAAGCCCCGGG 7422151
>seq218
Length=12993727
Score = 84.2 bits (92), Expect = 4e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767
||||| ||| | || || || || |||||||| || ||| | || || || || || |||
Sbjct 5719223 GTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 5719164
Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827
|| ||| | | || | ||||| |||||||| || || |||||||||||||| || ||
Sbjct 5719163 CTGAAGAAAAGGGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGTAGAGAT 5719104
Query 42828 GAGG 42831
||||
Sbjct 5719103 GAGG 5719100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944327124262480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |