Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq556 87.8 3e-12 seq537 84.2 4e-11 seq218 84.2 4e-11 >seq556 Length=21056529 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| || ||| | || || || ||||||||||| ||||| |||| || Sbjct 17129491 GGTGAGAGAGTGGTTGCTTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 17129550 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 17129551 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 17129610 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 17129611 ATTAGCAGAGATGAGG 17129626 >seq537 Length=7949590 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || |||||| || || || ||||||||||| ||| ||||| || | | |||||| || Sbjct 7422291 CTTCATGAAAAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTAGCTCGCTGCTCTTC 7422232 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| | | || | ||| ||||||| ||| | ||||| ||||||| Sbjct 7422231 TTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAG 7422172 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||||| || | || ||||| Sbjct 7422171 GTAGATGGCAAAAGCCCCGGG 7422151 >seq218 Length=12993727 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || || |||||||| || ||| | || || || || || ||| Sbjct 5719223 GTAGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 5719164 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | || | ||||| |||||||| || || |||||||||||||| || || Sbjct 5719163 CTGAAGAAAAGGGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGTAGAGAT 5719104 Query 42828 GAGG 42831 |||| Sbjct 5719103 GAGG 5719100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944327124262480