Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq841 118 1e-21
seq396 100 3e-16
seq451 82.4 7e-11
>seq841
Length=5312791
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| | || |||| ||| | ||| | || || || || || || ||||| || |
Sbjct 4753363 CCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4753422
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || |||||| |||||| | ||||||||| || ||
Sbjct 4753423 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 4753482
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| ||||||||| ||| || ||||| | || | |||||| | ||| |||
Sbjct 4753483 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 4753542
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | ||| | || ||||||||||| || || ||||| |||||||||
Sbjct 4753543 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 4753590
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| | || |||| ||| | ||| | || || || || || || ||||| || |
Sbjct 4754209 CCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4754268
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || |||||| |||||| | |||||||||||| ||
Sbjct 4754269 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 4754328
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||| ||||||||| ||| || ||| | | |||| |||||| | ||| ||
Sbjct 4754329 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCAACC 4754388
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || ||||||||||| || || ||||| ||||||||
Sbjct 4754389 TCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4754435
>seq396
Length=9930490
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||| | ||| | || || || || || || ||||| || || |||||
Sbjct 5100951 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGTCCG 5100892
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || ||||| |||||| | |||||||||||| || ||||| ||||||
Sbjct 5100891 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 5100832
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | |||||| | ||| || || | ||| |
Sbjct 5100831 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 5100772
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| ||||| ||||| || || ||||||||||||||
Sbjct 5100771 GTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 5100737
Score = 98.7 bits (108), Expect = 9e-16
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||| | ||| | || || || || || || ||||| || || |||||
Sbjct 5101179 CGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 5101120
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || ||||| |||||| | |||||||||||| || ||||| ||||||
Sbjct 5101119 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 5101060
Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078
||| ||| || ||| | | || | |||||| | ||| || || | ||| |
Sbjct 5101059 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 5101000
Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117
|| ||||| ||||| || || ||||| ||||||||| ||
Sbjct 5100999 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 5100961
>seq451
Length=22369399
Score = 82.4 bits (90), Expect = 7e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983
|||||||||||||||| || || |||||| ||| |||||||| || ||||| | |
Sbjct 17790483 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 17790542
Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCC 127011
||| |||||||||||| ||||| |||||
Sbjct 17790543 TCAGTCGCTGCTGATCTGGAGGAATGCC 17790570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475494719533520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |