Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq731 140 5e-28 seq307 113 7e-20 >seq731 Length=6069190 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 ||||| |||| |||||| ||| |||| || || || || ||||| || | || |||||| Sbjct 4075405 GTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGGATGTCACAGACC 4075464 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 | ||||||||| ||||||||||| || || |||||||| || || || || ||||| ||| Sbjct 4075465 CGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGGACCAAACCGAAC 4075524 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||| || | ||| |||| | || || || | || | || | ||||| Sbjct 4075525 ACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGTACATGAGGAGGGTAGATCATATCT 4075584 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 |||| || || || || || || ||||||||||| || || || | ||| Sbjct 4075585 GCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCGATCATCTG 4075634 Score = 129 bits (142), Expect = 8e-25 Identities = 206/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 4073388 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 4073447 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 4073448 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 4073507 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || || || || || | ||| | || Sbjct 4073508 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 4073567 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||| ||||| || || || ||||| || | | ||| | ||| || || | Sbjct 4073568 TTTCACCAAAGATTGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 4073627 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||||||||| || |||||| || || || || || || || ||| Sbjct 4073628 TAGCATCAATGTCGCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 4073683 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | ||||| ||||| | || ||||||||||| ||||| ||| | Sbjct 4078153 CTTACGTGTTGTACAGTTTTCTCCATAATATCCTGTCCGCGTACAGTCGCATTCATACTG 4078212 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || ||||||||||| |||| ||||| || |||| |||||||||||||| Sbjct 4078213 ATCAAATCCTGTTGTCATGCATACTCCTCTGTTCTGACAGGGGTTTGAACAGCAAGGGTT 4078272 Query 10960 GGCT 10963 |||| Sbjct 4078273 GGCT 4078276 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || ||||||||| | || || || || |||| ||||| Sbjct 4077288 ACCTTTAACACCCATCGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTATA 4077347 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| ||||| | |||||| ||||| || Sbjct 4077348 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTATTGTAAGTTGG 4077407 Query 10509 GGGACTGTCAATCA 10522 || |||||||||| Sbjct 4077408 TGGGCTGTCAATCA 4077421 >seq307 Length=10662554 Score = 113 bits (124), Expect = 7e-20 Identities = 191/277 (69%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961 |||||||||| || | ||| || | | ||| || || || ||||| || || Sbjct 1114338 CTTCACATTGAGGCACACGAGCTTCTCGAGCGATGCTGTCTTAACTATGTCAAAGCCAGT 1114397 Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021 || || ||||| || ||||||||||||||| | |||||||||||| ||| | | || Sbjct 1114398 TTCTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAG 1114457 Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081 ||| |||| |||||||||||| || | ||| | ||||| || || || || || ||| Sbjct 1114458 CCCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATACCATTGGG 1114517 Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | ||||| || | | ||||| | || | || | ||| || | ||| ||||| | Sbjct 1114518 TTGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATACAA 1114577 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||||| ||| || || |||| | ||| ||| || Sbjct 1114578 CTCTTCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 1114614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723718745328200