Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq841 141 1e-28 seq396 129 7e-25 >seq841 Length=5312791 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || || || || || |||| ||| ||||||| || ||||| ||||| |||||||| Sbjct 4754206 TTACCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 4754265 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || |||||| | || || ||||||||||| ||||| |||| | |||||| |||| Sbjct 4754266 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGG 4754325 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || ||||||||| |||||| ||| | || | | ||||| || | || Sbjct 4754326 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCA 4754385 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || | |||||||| ||||| ||||| || || |||||||| |||||||| Sbjct 4754386 ACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 4754438 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 || || || || || |||| ||| ||||||| || ||||| ||||| |||||||| Sbjct 4753360 TTACCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 4753419 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || |||||| | || || ||||||||||| ||||| |||| | |||||| || | Sbjct 4753420 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGG 4753479 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | || ||||||||| |||||| ||||| || | | ||||| || | || Sbjct 4753480 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCA 4753539 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 4753540 ACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4753589 Score = 109 bits (120), Expect = 6e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||||| ||| ||||||| || ||||| ||||| |||||||||| Sbjct 4753589 TGCCACCTCTAAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGG 4753648 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| ||||| |||| | |||||| || | | Sbjct 4753649 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGG 4753708 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 | | || ||||||||| |||||| ||||| Sbjct 4753709 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA 4753741 >seq396 Length=9930490 Score = 129 bits (142), Expect = 7e-25 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || | |||| ||| ||||| | || ||||| ||||| |||||||| | Sbjct 5100965 TGCCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 5100906 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| |||| || ||||||||||| || || |||| | |||||| |||| | Sbjct 5100905 ACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGG 5100846 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||| | || | | ||||| || | || | Sbjct 5100845 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 5100786 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 | || | |||||||| ||||| ||||| || || ||||| || ||||||||| || Sbjct 5100785 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTTGAAC 5100730 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||| ||||| | || ||||| ||||| |||||||| || Sbjct 5101192 GCCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 5101133 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || ||||| |||| || ||||||||||| || || |||| | |||||| |||| || Sbjct 5101132 CAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 5101073 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| ||| | || | | ||||| || | || || Sbjct 5101072 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 5101013 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 5101012 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5100965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565231172013960