Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq841 147 2e-30 seq396 132 5e-26 seq556 87.8 2e-12 seq218 86.0 6e-12 >seq841 Length=5312791 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || || || || || || || ||||| |||||||| | || || ||| | Sbjct 4754439 AAAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTTGAGCC 4754380 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || |||| ||||| || || |||||| |||| Sbjct 4754379 CAGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 4754320 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | ||| ||||| |||||||| || | ||||||||| ||||| Sbjct 4754319 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTA 4754260 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| |||||| | || |||||| | |||||||| ||||| || || Sbjct 4754259 CAACATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCTTGAGGGGTGG 4754209 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 4753589 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCCAGT 4753530 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | || || Sbjct 4753529 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4753470 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 4753469 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 4753410 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || |||||| | |||||||| ||||| || || Sbjct 4753409 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCTTGAGGGGTGG 4753363 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || || |||||| | || || ||| |||| || | ||| ||||| Sbjct 4753733 AAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGCAGAGGCTGATCTTCGCTGGCAAG 4753674 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||||||| ||||||||||||||| |||||| | || |||||| Sbjct 4753673 CAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACCCTGCAT 4753614 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 | ||||||||| | ||||| ||| Sbjct 4753613 CTTGTGCTGCGTCTTAGAGGTGGC 4753590 >seq396 Length=9930490 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 5100734 AAAATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 5100793 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || |||||| |||| Sbjct 5100794 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 5100853 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| |||| |||||| | |||||| Sbjct 5100854 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCTGACTAC 5100913 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| |||||| | || || ||| | |||||||| |||| || ||| Sbjct 5100914 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGGC 5100964 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 5100965 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 5101024 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| |||| || Sbjct 5101025 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 5101084 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| |||| |||||||| ||||||||| Sbjct 5101085 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 5101144 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || ||| | |||||||| |||| || ||| Sbjct 5101145 ATCCAGAAGGAATCCACTCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 5101192 >seq556 Length=21056529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||||| || ||||| ||||| | || | Sbjct 17129626 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 17129567 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || |||| Sbjct 17129566 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 17129507 Query 133037 CCACCA 133042 | |||| Sbjct 17129506 CAACCA 17129501 >seq218 Length=12993727 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || |||||||| || |||||||| ||| ||||| Sbjct 5722112 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 5722171 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || || || || || || || ||||||||||| || |||| |||||||||| Sbjct 5722172 GTACTGGATAGGGAAGATGACGAAGCGGCGGGGGTTGTCCCGCAGCAGCGGCTCC 5722226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166404040320