Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq774 95.1 5e-14 seq945 87.8 7e-12 seq307 84.2 9e-11 >seq774 Length=5862070 Score = 95.1 bits (104), Expect = 5e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| |||| || | ||||| || || ||||||||||| | || || || || || Sbjct 3850685 GTTACTAATGCTGTGGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 3850744 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||| || | || || || |||||||| ||||| || ||||| Sbjct 3850745 AAAGATGCTGGAACCATTGCAGGGCTCAACGTACTGCGAATTATCAATGAGCCGACAGCT 3850804 Query 451433 GCTGCTCTAGCATATGGACT 451452 ||||| |||| ||||| || Sbjct 3850805 GCTGCGATAGCCTATGGTCT 3850824 >seq945 Length=4434982 Score = 87.8 bits (96), Expect = 7e-12 Identities = 274/419 (65%), Gaps = 9/419 (2%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | ||||| | || || ||||| | || || || || || || Sbjct 2045680 GGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAGACCTTCTTCCCAGAGGAG 2045621 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| ||||| || ||||| || | || || ||| | || | | | Sbjct 2045620 ATCAGCTCCATGGTCCTTACCAAGATGAAGGAGATCGCTGAGGCCTATCTGGGG-CGCAA 2045562 Query 451313 GTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 | | | || ||| || || || || || || || |||||||| | || || || || || Sbjct 2045561 GGTGCAGAATGCTGTCATCACAGTGCCTGCCTACTTCAATGACTCCCAGCGCCAGGCCAC 2045502 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 ||||| || || || |||| | ||||| | || ||||| || || || ||||| Sbjct 2045501 CAAAGACGCTGGCACCATCACTGGCCTTAATGTGATGCGCATTATCAACGAGCCCACAGC 2045442 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaTATT 451486 ||||||| |||| ||||| || ||| || ||| | | | | ||| || ||| | Sbjct 2045441 AGCTGCTATAGCCTATGG-CTTGGACAA-GAAAGGTACCCGGGCCGGAGAGAAGAATGTG 2045384 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546 | | ||||| || || || || ||| |||| || | ||| | ||||| ||||| Sbjct 2045383 CTCATCTTTGACTTGGGAGGGGGCACTTTTGATGTATCCATCCTTACCATTGAGGATGGC 2045324 Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | ||||| || ||| | || |||||| || || || || || || || |||| || Sbjct 2045323 ATCTTTGAGGTGAAGTCCACAGCTGGTGACACCCACCTGGGTGGGGAGGACTTTGACAA 2045265 >seq307 Length=10662554 Score = 84.2 bits (92), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| |||||||||| || | ||||| | || ||||| ||||||||| Sbjct 47637 AAAGCCAAGCCCCATATTCAAGTTGATGTTGGAGGTGGACAGACAAAAACATTTGCTCCT 47696 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| ||||||| || || || ||||| ||||| || || Sbjct 47697 GAAGAAATTTCTGCTATGGTCCTGACAAAGATGAAGGAAACTGCTGA 47743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975692503888484