Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq774 109 4e-18 seq485 93.3 3e-13 >seq774 Length=5862070 Score = 109 bits (120), Expect = 4e-18 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| |||||| |||| | || || ||||| || |||| Sbjct 3849856 CAAAAACCGTATTGGTTGGATTCATTGCAACTTGGTTCTTCGCAGCATCGCCGATCAACC 3849797 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 3849796 TCTCCGTATCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 3849737 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || |||| ||| ||||||| ||||| | | || || || | ||||| Sbjct 3849736 TGATTTCCACCTTCCCATGTTGGAATACACCAACACAGGAATAGGTGGTACCAAGATCAA 3849677 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 3849676 TTCCGACAGC 3849667 Score = 105 bits (116), Expect = 5e-17 Identities = 360/554 (65%), Gaps = 18/554 (3%) Strand=Plus/Minus Query 517610 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 517669 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 3851488 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 3851429 Query 517670 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 517728 || | || |||| ||| | ||| || ||||||| || || ||||| | || || Sbjct 3851428 AAGTCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACGAT 3851370 Query 517729 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 ||||| | ||| ||||| || ||||| | |||| | | ||||| || || || || Sbjct 3851369 GTCATGGATCTGCGATTTGTCGAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 3851310 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 517845 | | |||| ||| | | || ||||| || |||||| |||| || ||| Sbjct 3851309 GGTGCCACGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 3851252 Query 517846 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 517904 || || ||||| || || | | |||||||| ||| || | | || || ||||| Sbjct 3851251 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCGATACTGGCCTGCGTGCTAGAAG 3851194 Query 517905 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 517960 | || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 3851193 ACAGAGTACGCTTTGCACGCTCGCATGCGGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 3851134 Query 517961 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 518020 |||| ||| | || | || | |||||| || ||| | | || | Sbjct 3851133 CGCTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATG 3851078 Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || ||||| ||||| || ||||| | ||| | |||| || | | | || | || Sbjct 3851077 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAG 3851018 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | |||||||||| | || || | |||||| ||| ||||| || | || || ||| Sbjct 3851017 ATGCCATCTTCAATGGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCGAAGATA 3850958 Query 518141 AGTACATTCATTTC 518154 || |||||| |||| Sbjct 3850957 AGAACATTCCTTTC 3850944 >seq485 Length=8713404 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | ||||| || ||||| || |||||| | ||| | | | ||||| Sbjct 3173573 TGTTGTGGCTACAGTGGCATTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 3173514 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 3173513 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 3173454 Query 367113 TGATGG 367118 ||| || Sbjct 3173453 TGACGG 3173448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780771635370238