Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq841 127 5e-24
seq396 113 1e-19
seq451 89.7 1e-12
>seq841
Length=5312791
Score = 127 bits (140), Expect = 5e-24
Identities = 156/212 (74%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || ||||| || || || || ||||| || | || || | |||||||||
Sbjct 4753381 ACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4753440
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || | || || || || ||||||||||| ||||| ||
Sbjct 4753441 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 4753500
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || |||||| |||||||||||||| ||| || ||||| ||||| | |||
Sbjct 4753501 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCTAGGGTGATGGTC 4753557
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 4753558 TTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4753589
Score = 122 bits (134), Expect = 2e-22
Identities = 124/162 (77%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || ||||| || || ||||| || || || || ||||| |||| || ||
Sbjct 4753596 TCTAAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 4753655
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| |||||||| || |||||||| || | || || || || ||||||||
Sbjct 4753656 GCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 4753715
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
||| ||||| || || || |||||| ||||||||||||||
Sbjct 4753716 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC 4753757
Score = 116 bits (128), Expect = 8e-21
Identities = 155/214 (72%), Gaps = 6/214 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || || ||||| || || || || ||||| || | || || | |||||||||
Sbjct 4754227 ACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 4754286
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || | || || || || ||||||||||| ||||| ||
Sbjct 4754287 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 4754346
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || ||||| |||||||| ||| || || ||||| || | |||
Sbjct 4754347 ATCTTGGCCTTTACATTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGAGTGATGGTC 4754403
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| || |||| || || || || | |||||||
Sbjct 4754404 TTGCCGGTCAGGGTCTTCACAAAGATCTGCATTT 4754437
>seq396
Length=9930490
Score = 113 bits (124), Expect = 1e-19
Identities = 153/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || |||||||| || || || || ||||| || | || || | || |||||
Sbjct 5101173 ACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCC 5101114
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || || || || ||||||||||| ||||| ||
Sbjct 5101113 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 5101054
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| || || |||||||| | |||
Sbjct 5101053 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 5100997
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 5100996 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5100965
Score = 111 bits (122), Expect = 3e-19
Identities = 156/215 (73%), Gaps = 8/215 (4%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990
||||| || || ||||| || || || || ||||| || | |||| || | || |||||
Sbjct 5100945 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAG-GTGCGTCCGTCTTC 5100887
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || || ||||| || | || || || || ||||||||||| ||||| ||
Sbjct 5100886 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTG 5100827
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107
|| || ||| || |||||||||||||| ||| || || |||||||| | ||
Sbjct 5100826 GATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGT 5100770
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||| || |||| || || || || | |||||||
Sbjct 5100769 CTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTT 5100735
>seq451
Length=22369399
Score = 89.7 bits (98), Expect = 1e-12
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010
|||||||||||||||| || | || || | |||||||| ||||||||||| || || |
Sbjct 17790483 CTTTTTGAATATTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 17790542
Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| ||||| || || |||||||||||||||
Sbjct 17790543 TCAGTCGCTGCTGATCTGGAGGAATGCCT 17790571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109467057816641
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |