Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq841 107 1e-18
seq396 102 5e-17
>seq841
Length=5312791
Score = 107 bits (118), Expect = 1e-18
Identities = 164/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811
|| || |||||||| | || || | || | ||| ||| ||||| ||||| |||||
Sbjct 4753360 TTACCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 4753419
Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871
|| ||| | || |||| |||||||| || || || || || || | ||||| || |
Sbjct 4753420 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGG 4753479
Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929
|| | || |||||||| ||||| ||||| || || || | |||| || ||
Sbjct 4753480 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCT 4753537
Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||| || | ||| ||||| || || || || ||||||||||||||||||||
Sbjct 4753538 CAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4753589
Score = 98.7 bits (108), Expect = 6e-16
Identities = 164/235 (70%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811
|| || |||||||| | || || | || | ||| ||| ||||| ||||| |||||
Sbjct 4754206 TTACCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 4754265
Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871
|| ||| | || |||| |||||||| || || || || || || | ||||| || |
Sbjct 4754266 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGG 4754325
Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCT 34929
|| | || |||||||| ||||| || || || || || | |||| || ||
Sbjct 4754326 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTAC--ATTCTCGATGGTGTCACTGGGCT 4754383
Query 34930 CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|||| || | || ||||| || || || || |||||||||||||||||||| ||
Sbjct 4754384 CAACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 4754438
>seq396
Length=9930490
Score = 102 bits (112), Expect = 5e-17
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||| ||||| ||||| || ||| | ||| | || |||||||| || || |||||
Sbjct 5101156 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAA 5101097
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || | ||||| || | || | || |||||||| ||||| || || |
Sbjct 5101096 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--A 5101039
Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967
| || || | |||| || |||||| || | ||| ||||| || || || || ||||||
Sbjct 5101038 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 5100979
Query 34968 ACAAAGATCTGCAT 34981
||||||||||||||
Sbjct 5100978 ACAAAGATCTGCAT 5100965
Score = 98.7 bits (108), Expect = 6e-16
Identities = 162/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|||||||||| | || || | || | ||| ||| ||||| ||||| ||||| ||
Sbjct 5100963 CCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5100904
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
| | | ||| | || |||||||| || || ||||| || || | ||||| || | ||
Sbjct 5100903 AAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 5100844
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932
| || |||||||| ||||| || || || || || | |||| || |||||
Sbjct 5100843 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAA 5100786
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
| || | ||| ||||| || || || || ||||||||||| |||||||| ||
Sbjct 5100785 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTT 5100734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324629552529144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |