Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq774 122 7e-22 >seq774 Length=5862070 Score = 122 bits (134), Expect = 7e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 3850685 GTTACTAATGCTGTGGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 3850744 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || || || || || ||||||||||| || || ||| Sbjct 3850745 AAAGATGCTGGAACCATTGCAGGGCTCAACGTACTGCGAATTATCAATGAGCCGACAGCT 3850804 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 3850805 GCTGCGATAGCCTATGGTCTGGACAAA 3850831 Score = 91.5 bits (100), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || ||||| ||| ||||||||||| | ||| |||| || Sbjct 3849666 AGCTGTCGGAATTGATCTTGGTACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAA 3849725 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || |||||| | || || ||| || ||| | ||||| Sbjct 3849726 GGTGGAAATCATTGCCAATGACCAGGGTAACCGGACCACGCCAAGCTACGTTGCCTTCAC 3849785 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || | || ||||| || || | |||| || || ||||| ||| Sbjct 3849786 AGATACGGAGAGGTTGATCGGCGATGCTGCGAAGAACCAAGTTGCAATG--AATCCAACC 3849843 Query 550169 AATACTATTTTTG 550181 ||||| |||||| Sbjct 3849844 AATACGGTTTTTG 3849856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029241899146270