Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq774 96.9 2e-14 seq841 91.5 1e-12 seq657 86.0 4e-11 seq396 86.0 4e-11 >seq774 Length=5862070 Score = 96.9 bits (106), Expect = 2e-14 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 3852422 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3852481 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 ||||| || || ||||| |||| Sbjct 3852482 AATGGCATCCTGAATGTGTCTGC 3852504 Score = 91.5 bits (100), Expect = 1e-12 Identities = 220/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 || || || || ||||| ||||| |||| |||||| || || | | | | ||| || Sbjct 3851163 ACCGCATGCGAGCGTGCAAAGCGTACTCTGTCTTCTAGCACGCAGGCCAGTATCGAAATT 3851222 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 3851223 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 3851282 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || ||| | | || | ||| | Sbjct 3851283 CTGAATGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCC 3851342 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| |||||||| || ||||||| || || || || || || || || | || ||| Sbjct 3851343 AAACTCGACAAATCGCAGATCCATGACATCGTGCTGGTTGGTGGGTCTACTCGTATCCCA 3851402 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || || ||||| |||| || | | || ||||| ||| || | || | || | | Sbjct 3851403 AAGATTC-AGAAACTGCTG-CAGGACTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 3851460 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || ||||| || Sbjct 3851461 ATCCTGATGAAGCTGTGGCTTATGGTGC 3851488 >seq841 Length=5312791 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| ||||| || || || | || |||||||| ||||| |||||||| Sbjct 4753434 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 4753493 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| |||||| ||||| || ||| || | | ||| ||||| || Sbjct 4753494 GTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCTAGGGTGAT 4753553 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| || || || || Sbjct 4753554 GGTCTTGCCGGTCAGGGTCTTCACAAAGATCTG 4753586 >seq657 Length=20762040 Score = 86.0 bits (94), Expect = 4e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 474778 TCAAGCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 ||| || || |||||||| ||| ||| |||| || | |||||||| | | ||||||| Sbjct 19485882 TCAGGCTACGAAAGATGCTGGGCAGA-TTGCTGGCTTGAATGTTTTGAGGGTGATTAATG 19485824 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAG 474887 ||||||||||||| |||||||| |||||||| || ||| | ||||||| Sbjct 19485823 AACCAACAGCAGCTGCACTTGCCTATGGTCTGGACAAGTCTGAAGACAAAG 19485773 >seq396 Length=9930490 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| |||||||| || || | || ||||| || ||||| ||||||||| Sbjct 5100891 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 5100832 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| || ||| ||||| || ||| || | | |||||||| || Sbjct 5100831 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 5100772 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || ||||| || Sbjct 5100771 GTCTTGCCAGTCAGGGTCTTCACAAAAATCTG 5100740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268135318566404