Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq252 221 1e-52 seq340 168 8e-37 >seq252 Length=12405487 Score = 221 bits (244), Expect = 1e-52 Identities = 598/909 (66%), Gaps = 7/909 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 3158860 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 3158801 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| |||||| || |||||| ||| || | Sbjct 3158800 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGCTCAGGTCTCCTACCCCAAAAA 3158744 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| | || |||| || ||||| | || ||||| | ||||| Sbjct 3158743 CACAGACAGAGCGAACGTGAATTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACGT 3158684 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| |||||||| || | || | |||||| || |||| Sbjct 3158683 CACCTTCAAAGTACTGCCACTTGACAAACCTCGCCAGTGCATTCATGTCAGAAACATCGT 3158624 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 3158623 ACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGTATTCTCTGAATTGTTGCCCAC 3158565 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 3158564 AGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTACTG 3158505 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 || |||| || | |||| | || ||||| || || || || || || Sbjct 3158504 CTTTCTAGTACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 3158445 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 3158444 ATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACCATCA 3158385 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 3158384 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCC 3158325 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 3158324 AAGCTGTTTTCACCTTTAAGAGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 3158265 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| || || | |||||| | ||| ||||| || | || ||| || Sbjct 3158264 GGAAAGTCAAGGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGA 3158205 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | ||||| ||||| || || || ||||| Sbjct 3158204 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTACTCCATGAAGCATATACAACACTCTCT 3158145 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 3158144 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 3158086 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | || || | |||||||| | ||||| Sbjct 3158085 AAAAGATTCTGGAGACTTTTTGTCAACATGAATACAGTAAAAATTCTGAGGGACATAGAT 3158026 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 3158025 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 3157966 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 3157965 TGGAAATTC 3157957 >seq340 Length=24413552 Score = 168 bits (186), Expect = 8e-37 Identities = 609/940 (65%), Gaps = 36/940 (4%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| || || || ||||| |||| |||| ||| ||| |||||| | Sbjct 5935881 TGTGGCGCAGGTGCTCCTCGAGACACTGGATGGCGGCGTTGTCCACGAGGGGGTCGAACT 5935940 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || || ||||| | ||| || | |||| ||||||| || | |||| | | Sbjct 5935941 TGTTGGCCAAGAGGTGGTGC---TGCTGGAGCAGCCAGGGCACGTCGCCCGCCCCGTAGA 5935997 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 |||||||| || |||| |||| ||| |||||||| | || || || || Sbjct 5935998 TGCAGACGGCGCGCTGGTGCTGGCCGGCGCAGGGCGGGTAGGGCGCGCCCTTGCTGGTGT 5936057 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || |||||||||||| || | | || | || | |||||| ||| | | Sbjct 5936058 CGCCCTCCAGGTACTGCCACTTGACCAGGCGGGGCAGGGCGTTCATGTCCGAGAGCTGGA 5936117 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| || |||| | ||| || || ||||||||||| || | ||||||||||| | Sbjct 5936118 ACTTGTCATTCTGGGGCATGGCGCCCGGCACGCCGGGCATGCGGTTGAGGGTGGCCCAGA 5936177 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGATTAACCTG 160403 |||||||||||||||||| |||||||| | ||| || | ||||| || || | || Sbjct 5936178 CGTGTTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACTGCTGCG----CCGTG 5936233 Query 160404 ----TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGA 160459 || | || | || ||| ||| | || || |||| ||||||| |||| | Sbjct 5936234 GGGTTCTCAAAG-ATGTACTGCACGAAGGCCCGTGTGACCACAATGTACGCGTTGCCCGT 5936292 Query 160460 GAATATCGG-TA--TGGGTATAGGCGGC-GTGTCTTTGT-CCTGACCGGTGTTAGACACC 160514 ||| || || || || | |||||| || ||| ||| ||| |||| || || Sbjct 5936293 GAACATGGGATAGTTGTGCGGTGGCGGCGGTTTCTCTGTGGCTGTCCGGAAGATGA-AC- 5936350 Query 160515 ACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTG--CGGTGGCATGC 160572 ||| ||| |||| | | | ||| | || |||| | | | ||| | | Sbjct 5936351 ------TTCCCCACTTCGTGGTGGTACCGCCAGCGCTCCTGCTTGGGGCCCGAGGCCTTC 5936404 Query 160573 GTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGT 160632 |||| ||| | ||||| || | ||| ||||| ||||||||| | || Sbjct 5936405 --TCCGACTCCATGCTGTTCTGCCCCTGCAGCACCTTCAGGGCACGGACGATCTCGATGT 5936462 Query 160633 TCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCA---TTTCGCGC 160689 | ||||||| || || || || ||||| ||| | ||||| ||| | | || Sbjct 5936463 TGGTCTTGATGGGGAAATCAGTGCCGCAGGTGTTGAGGACGTAGCGCCACGGCATGGGGC 5936522 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 || | |||||||| |||||| || | || ||||||| ||| |||||| || | Sbjct 5936523 TCCG---CAGCAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGCCGGGACCAGGAGGCAT 5936579 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 |||| || | || | || |||||||||||||| ||| || | |||| || Sbjct 5936580 ACACCACCTCTTCCAAGCGGCTCGCCACAAAGACGTTGCGGAAGCAGGCTGCGATGGCCC 5936639 Query 160810 CCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869 ||| ||| ||| | ||| | ||| | ||| ||||| || | ||||| Sbjct 5936640 GCACGGCCTCTTGGAAGGCGGCCGGGGACTTGCTGTCAATGTGGACGCAGTAGACGTTCT 5936699 Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929 | || ||||||| || | || | || ||| ||||| || || || | ||||| || | Sbjct 5936700 GGGGGGCGTAGAGGGAGCGCAGGAGCCGCTCAAACATGTCGATTTTGTTGTGGATGACCA 5936759 Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | |||||||| || || ||||| | |||||| | ||||| Sbjct 5936760 TGGAGTAGGCGATGGGGAACTCCGCCTCCTCCTGGCTCAG 5936799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577211818809480