Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq841 145 5e-30
seq396 122 6e-23
>seq841
Length=5312791
Score = 145 bits (160), Expect = 5e-30
Identities = 173/233 (74%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807
|| || |||||||| | ||| || || || | |||| |||||||| ||||| |||||
Sbjct 4753360 TTACCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 4753419
Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867
|| ||| ||||| |||| ||||| ||||| || ||||||||||| | ||||| || |
Sbjct 4753420 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGG 4753479
Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCT 34925
|| | || |||||||| | || || ||||| || || || | ||| ||| ||
Sbjct 4753480 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCT 4753537
Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || || | ||| |||||||| || || |||||||| |||||||||||||||
Sbjct 4753538 CAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 4753590
Score = 138 bits (152), Expect = 7e-28
Identities = 171/232 (74%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807
|| || |||||||| | ||| || || || | |||| |||||||| ||||| |||||
Sbjct 4754206 TTACCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 4754265
Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867
|| ||| ||||| |||| ||||| ||||| || ||||||||||| | ||||| || |
Sbjct 4754266 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGG 4754325
Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCT 34925
|| | || |||||||| | || || || || || || || | ||| ||| ||
Sbjct 4754326 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTAC--ATTCTCGATGGTGTCACTGGGCT 4754383
Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || |||| || |||||||| || || |||||||| ||||||||||||||
Sbjct 4754384 CAACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4754435
Score = 86.0 bits (94), Expect = 4e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| || || || | |||| |||||||| ||||| ||||| || ||| ||||| ||||
Sbjct 4753605 CAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATC 4753664
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| ||||| || ||||||||||| | ||||| || | || | || ||||||||
Sbjct 4753665 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 4753724
>seq396
Length=9930490
Score = 122 bits (134), Expect = 6e-23
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | ||| || || || | ||| |||||||| ||||| ||||| ||
Sbjct 5101191 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5101132
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
||| |||| | || ||||| ||||| || || |||||||| | ||||| || | ||
Sbjct 5101131 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 5101072
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928
| || |||||||| | || || || || || || || | ||| ||| ||| |
Sbjct 5101071 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAA 5101014
Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| |||| ||| |||||||| || || |||||||| |||||||||||||||
Sbjct 5101013 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 5100964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325688739323237
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |