Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq196 129 1e-24 >seq196 Length=13513712 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||| ||| | |||||||| || ||||| || |||||||| || ||||| Sbjct 5150771 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 5150830 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 || ||||| || ||||| || |||| || || || || ||||| ||||| || ||||| Sbjct 5150831 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 5150890 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | |||||||| ||| ||||||| || || Sbjct 5150891 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 5150931 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 5153725 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 5153784 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 || ||||||| ||| ||| || || ||||| || | || || || || ||||||| Sbjct 5153785 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 5153844 Query 58789 TAACTTCTATTTTAGAACATACAAG 58813 ||||||||| | | | ||||| ||| Sbjct 5153845 TAACTTCTACTATCGGACATATAAG 5153869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903399647629280