Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq841 136 4e-27 seq396 129 6e-25 seq537 95.1 1e-14 seq165 84.2 2e-11 >seq841 Length=5312791 Score = 136 bits (150), Expect = 4e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| || || ||| | || || ||||| Sbjct 4753386 ATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 4753445 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| |||||| || || || |||||||||||||| |||||| Sbjct 4753446 CTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 4753505 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| ||||||| || || | ||||| ||| |||||||| Sbjct 4753506 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCTAGGGTGATGGTCTTGCCGGT 4753565 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || ||||||||| Sbjct 4753566 CAGGGTCTTCACAAAGATCTGCATG 4753590 Score = 125 bits (138), Expect = 7e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| || || ||| | || || ||||| Sbjct 4754232 ATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 4754291 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| |||||| ||||| || |||||||||||||| |||||| Sbjct 4754292 CTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 4754351 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||| | ||||| ||||||| || || | |||| ||| |||||||| Sbjct 4754352 GGCCTTTACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCGGT 4754411 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 4754412 CAGGGTCTTCACAAAGATCTGCAT 4754435 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| ||| || ||| | || || ||||| Sbjct 4753614 ATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 4753673 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| | || |||| |||||| || || || |||||||||||||| |||||| Sbjct 4753674 CTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 4753733 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCAC 133612 ||||| | ||||| ||||| ||||||| || Sbjct 4753734 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 4753769 >seq396 Length=9930490 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| || || ||| ||| || ||||| Sbjct 5100940 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGTCCGTCTTCCAGCTG 5100881 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| ||||| || |||||||||||||| |||||| Sbjct 5100880 CTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 5100821 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| ||||||| || || | ||||| ||| ||||| || Sbjct 5100820 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 5100761 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || ||||||||||| Sbjct 5100760 CAGGGTCTTCACAAAAATCTGCAT 5100737 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| || || ||| ||| || ||||||||||| Sbjct 5101161 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCA 5101102 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| ||||| || |||||||||||||| |||||| ||| Sbjct 5101101 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 5101042 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 5101041 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 5100982 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || || || ||||||||| || Sbjct 5100981 TTCACAAAGATCTGCATGCCT 5100961 >seq537 Length=7949590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | |||||||||||||| ||||| || | |||| |||||| Sbjct 7423611 TACTCCACTATTTCTGTACACAGATTGCTGCACTTGATGGTCCCTAAGTTCCGCTGATTG 7423552 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||| | |||||||| ||| |||||||||||||||||| |||||| || Sbjct 7423551 CTCTTCCGGTTGCACGAGTCTTTGTACAGCATGTACGGTGTGCCAGTCTC 7423502 >seq165 Length=2051013 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 |||||||| || |||||| ||||| | ||| | ||||||| |||||||||| || Sbjct 1965300 CCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATCGTGTCGTTGGGCTCCACCTCC 1965359 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| |||||| || ||||| || || || ||||||||||| Sbjct 1965360 AGGGTGATGGTTTTACCCGTCAGCGTCTTGACAAAAATCTGCAT 1965403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483414618256520