Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq340 100 3e-16 >seq340 Length=24413552 Score = 100 bits (110), Expect = 3e-16 Identities = 242/359 (67%), Gaps = 8/359 (2%) Strand=Plus/Plus Query 162629 CCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGAT 162688 ||||||| ||| || ||||| | |||||||| | ||| || || ||||||||| | Sbjct 5936436 CCTTCAGGGCACGGACGATCTCGATGTTGGTCTTGATGGGGAAATCAGTGCCGCAGGTGT 5936495 Query 162689 TAATAACATATTTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCG 162747 | | || || |||| | | | |||| | ||| ||||| | ||||| || || Sbjct 5936496 TGAGGACGTAGCGCCACGGCATGGGGC-TCCGCAGCAGGTCCTGCATGCAGTTGAGGTCA 5936554 Query 162748 GCCTGGACGCGACTCCACGACGCGTACACGACGCTCT-CCAACCTAGTGGCGACAAAGAC 162806 ||||| | || ||| || || ||||| || |||| |||| | | || |||||||| Sbjct 5936555 GCCTGCAGCCGGGACCAGGAGGCATACACCAC-CTCTTCCAAGCGGCTCGCCACAAAGAC 5936613 Query 162807 ATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTC 162864 ||| ||| || | | || || ||||||| | ||| | | || | || Sbjct 5936614 GTTGCGGAAGCAGGCTGCGATGGCCCGCACGGCCTCTTGGAAGGCGGCCGGG--GACTTG 5936671 Query 162865 CTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCG 162924 || || | ||| |||||||| | ||||| |||||||||| || | ||| | | ||| Sbjct 5936672 CTGTCAATGTGGACGCAGTAGACGTTCTGGGGGGCGTAGAGGGAGCGCAGGAGCCGCTCA 5936731 Query 162925 AACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || || || | ||| | || || || || || ||||||||||| |||||||| Sbjct 5936732 AACATGTCGATTTTGTTGTGGATGACCATGGAGTAGGCGATGGGGAACTCCGCCTCCTC 5936790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578424603300800