Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq396 127 2e-24 seq841 113 4e-20 >seq396 Length=9930490 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | |||||| || |||| ||||||||||| || ||||| Sbjct 5100927 TCCTTCTGGATGTTGTAGTCAGACAAGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAG 5100868 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||||| | | Sbjct 5100867 ATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 5100808 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 5100807 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 5100748 Query 35726 AATATCTGCATTCTG 35740 || ||||||||| || Sbjct 5100747 AAAATCTGCATTTTG 5100733 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| || |||| ||||||||||| || ||||| Sbjct 5101155 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAG 5101096 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||||| | | Sbjct 5101095 ATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 5101036 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 5101035 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 5100976 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 5100975 AAGATCTGCAT 5100965 >seq841 Length=5312791 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| | || ||||||||||| || || || Sbjct 4754245 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 4754304 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||| | | | Sbjct 4754305 ATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTC 4754364 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 4754365 TCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACA 4754424 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 4754425 AAGATCTGCATT 4754436 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| ||| | || ||||||||||| || || || Sbjct 4753399 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 4753458 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | |||| || ||||||||| |||||| ||| | | | Sbjct 4753459 ATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 4753518 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || || || | ||||| || || || |||| || |||||| Sbjct 4753519 TCAATGGTGTCACTGGGCTCAACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACA 4753578 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 4753579 AAGATCTGCAT 4753589 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || ||| ||| | || ||||||||||| || || || Sbjct 4753627 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAG 4753686 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| || |||||| || | |||| || ||||||||| |||||| Sbjct 4753687 ATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 4753733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450787835476840