Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq396 118 1e-21 seq841 100 3e-16 >seq396 Length=9930490 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| || || |||| ||| || || || ||||||||||| || ||||||||||| | | Sbjct 5100963 CCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5100904 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || |||| | ||| || ||||| ||||| ||||| |||| | |||||||||||| || Sbjct 5100903 AA-GGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 5100845 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||||| || || || || || || || || | ||||| | || || Sbjct 5100844 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 5100785 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || || || | || || || ||||| ||||||||| Sbjct 5100784 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTTG 5100733 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| ||| || || || ||||||||||| || ||||||||||| Sbjct 5101191 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5101132 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| ||||| ||||| |||| | |||||||||||| || Sbjct 5101131 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 5101072 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 5101071 ATGCCTTCCTTGTCCTGGATCTT 5101049 >seq841 Length=5312791 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||| || || || ||||||||||| || ||||||||||| | |||| | Sbjct 4754221 CGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 4754280 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| || || |||| | |||||||||||| || |||||||| || Sbjct 4754281 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 4754340 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || || || || || | ||||| | || || || ||||| ||| Sbjct 4754341 TCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGAGTGATG 4754400 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || ||||| | || || || || || |||||||| Sbjct 4754401 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 4754438 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| ||| || || || ||||||||||| || |||||||||||| Sbjct 4753591 CCACCTCTAAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 4753650 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| | ||||||||| || || Sbjct 4753651 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 4753710 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 4753711 ATGCCTTCCTTGTCCTGGATCTT 4753733 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| ||| || || || ||||||||||| || ||||||||||| | |||| | Sbjct 4753375 CGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 4753434 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || ||||| ||||| || || |||| | ||||||||| || || |||||||| || Sbjct 4753435 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 4753494 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || || ||||| || | ||||| | || || || || || ||| Sbjct 4753495 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCTAGGGTGATG 4753554 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| | || || || || || ||||| Sbjct 4753555 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4753589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505391937217960