Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq396 179 4e-40
seq841 174 2e-38
>seq396
Length=9930490
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || |||||||||||| | ||
Sbjct 5100965 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 5101024
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| ||||||| || || ||||||||||| || ||||| || || |||
Sbjct 5101025 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 5101084
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || || || | || ||||| | ||||| ||
Sbjct 5101085 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 5101144
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| |||||||||||||| ||||| || |||| || | |||||
Sbjct 5101145 ATCCAGAAGGAATCCACTCTCCATCTTGTGCTGCGCCTGAGGGGTGG 5101191
Score = 165 bits (182), Expect = 9e-36
Identities = 168/219 (77%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| ||||| || || |||||||| || || |||||||||||| | |
Sbjct 5100736 AATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 5100795
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||||| ||| ||||||| || || ||||||||||| || ||||| || || ||
Sbjct 5100796 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 5100855
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || |||||||| ||||| || || || | || ||| | | ||||| ||
Sbjct 5100856 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCTGACTACAA 5100915
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||||||||| || ||||| || |||| ||
Sbjct 5100916 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCT 5100954
>seq841
Length=5312791
Score = 174 bits (192), Expect = 2e-38
Identities = 168/216 (78%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| || ||||||||||| || ||||||||||||||| | |
Sbjct 4754436 AATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTTGAGCCCAG 4754377
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | ||| | ||||| || || ||||||||||| || ||||| || || ||
Sbjct 4754376 TGACACCATCGAGAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCA 4754317
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || || ||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 4754316 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 4754257
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620
|||| ||||||||||| || ||||| || ||||
Sbjct 4754256 CATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCG 4754221
Score = 163 bits (180), Expect = 3e-35
Identities = 165/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || ||||||||||| || || || || |||||| | ||
Sbjct 4753589 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTAGAAGTTGAGCCCAGT 4753530
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| || || ||||||||||| || ||||| || || |||
Sbjct 4753529 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 4753470
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || || ||||| ||||| || || |||| || ||||| | ||||| ||
Sbjct 4753469 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 4753410
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620
|||| ||||||||||| || ||||| || ||||
Sbjct 4753409 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCG 4753375
Score = 129 bits (142), Expect = 7e-25
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 27454 GTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATT 27513
|||||| | |||| | ||||| ||| | ||||| || || ||||||||||| || |||
Sbjct 4753769 GTTGAGCCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATT 4753710
Query 27514 CCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTA 27573
|| || || |||||| | || || || ||||| ||||| || || |||| || |||||
Sbjct 4753709 CCCCCTGATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTG 4753650
Query 27574 GCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| ||||| || |||| ||||||||||| || ||||| || |||||||| | |||||
Sbjct 4753649 TCCGACTACAACATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGTCTTAGAGGTGG 4753591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570303107155760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |