Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq340 291 1e-73 seq374 145 1e-29 >seq340 Length=24413552 Score = 291 bits (322), Expect = 1e-73 Identities = 669/999 (67%), Gaps = 14/999 (1%) Strand=Plus/Minus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || || ||| |||||||||| |||||| |||| | | ||| || | Sbjct 5936873 CGCCCGGCGAGTACCTGAACATGACTAAGGACTGCAGCAACTTCAAGGA-GACCCGGCGA 5936815 Query 13660 ATC-TCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 || ||| | || ||||||| ||| |||| ||||| |||||||||||||| || || Sbjct 5936814 TTCATCGAGTTCCCGCTGAGCCAGGAGGAGGCGGAGTTCCCCATCGCCTACTCCATGGTC 5936755 Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778 |||||| |||| ||||| ||||| ||||| |||||| | || |||||||||| |||||| Sbjct 5936754 ATCCACAACAAAATCGACATGTTTGAGCGGCTCCTGCGCTCCCTCTACGCCCCCCAGAAC 5936695 Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCC 13838 |||||||||||||| | ||| ||||||| | || ||| || ||| |||| Sbjct 5936694 GTCTACTGCGTCCACATTGACAGCAAGTCCCCGGCCGCCTTCCAAGAGGCCGTGCGGGCC 5936635 Query 13839 ATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGC 13898 ||||| ||||||| ||||| |||| ||| || | || |||||||| | | Sbjct 5936634 ATCGCAGCCTGCTTCCGCAACGTCTTTGTGGCGAGCCGCTTGGAAGAGGTGGTGTATGCC 5936575 Query 13899 TCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTC 13958 |||||| || ||||||| ||||||| ||||||| ||||||| |||| | Sbjct 5936574 TCCTGGTCCCGGCTGCAGGCTGACCTCAACTGCATGCAGGACCTGCTGCGGAGCCCCATG 5936515 Query 13959 AAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAG 14018 |||| | ||| | |||||| ||||| | || ||||| ||||||||||| | ||| Sbjct 5936514 CCGTGGCGCTACGTCCTCAACACCTGCGGCACTGATTTCCCCATCAAGACCAACATCGAG 5936455 Query 14019 ATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGC 14076 ||||| || || ||||||| ||| || ||||| | ||||| | || ||| | Sbjct 5936454 ATCGTCCGTGCCCTGAAGGTGCTGCAGGGGCAGAACAGCATGGAGTCGGAGAAGGCCT-- 5936397 Query 14077 CCAACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGG 14136 | || ||||| | | ||| || | |||| |||| || | | | Sbjct 5936396 CGGGCCCCAAGCAGGAGCGCTGGCGGTACCACCACGAAGTGG-----GGAAG-TTCATCT 5936343 Query 14137 TCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACG 14196 || || | || | || | ||||| |||| || ||||| || |||| |||| Sbjct 5936342 TCCGGACAGCCACAGAGAAACCGCCGCCACCGCACAACTATCCCATGTTCACGGGCAACG 5936283 Query 14197 CTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCC 14256 | ||| ||| |||||| |||| |||||| | | | || | || || ||| | | Sbjct 5936282 CGTACATTGTGGTCACACGGGCCTTCGTGCAGTACATCTTTGAGAACCCCACGGCGCAGC 5936223 Query 14257 TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGC 14316 | || | | ||| | ||||||| |||||||||||||| ||| | ||||||||| | Sbjct 5936222 AGTTCCTCGAGTGGGCCAAGGACACCTACAGCCCCGACGAACACGTCTGGGCCACCCTCA 5936163 Query 14317 AGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACA 14376 | | ||| ||| ||| || | || ||| | | ||||| | | |||||||| Sbjct 5936162 ACCGCATGCCCGGCGTGCCGGGCGCCATGCCCCAGAATGACAAGTTCCAGCTCTCGGACA 5936103 Query 14377 TGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGG 14436 || ||| | | | | ||||||||||| ||| ||||| || | || || || | Sbjct 5936102 TGAACGCCCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCG 5936043 Query 14437 CCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCG 14496 | | |||||||| |||| |||| ||| | |||| ||||||||| |||| | |||| Sbjct 5936042 CGCCCTACCCGCCCTGCGCCGGCCAGCACCAGCGCGCCGTCTGCATCTACGGGGCGGGCG 5935983 Query 14497 ACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACG 14555 ||||| |||||| ||| | | ||||| || ||||||||||||||| | | Sbjct 5935982 ACGTGCCCTGGCTGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGACCCCCTCGTG 5935924 Query 14556 GACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| | |||| | | ||||| || ||| || ||||| Sbjct 5935923 GACAACGCCGCCATCCAGTGTCTCGAGGAGCACCTGCGC 5935885 >seq374 Length=9903747 Score = 145 bits (160), Expect = 1e-29 Identities = 257/367 (70%), Gaps = 12/367 (3%) Strand=Plus/Minus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATGTTCGAGCGCCTC 13751 || ||||||||||| || ||| || |||||| |||||| |||||||| ||| Sbjct 5206095 TTCCCCATCGCCTATG---TCATGACCCTGCACAAGGAGTTCGAGACCTTCGAGCGGCTC 5206039 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC--CG 13809 | | || ||||| || || ||| |||||||||||||||||||| ||||| | || Sbjct 5206038 TTCCGCGCGGTCTACATGCCCCAAAACGTCTACTGCGTCCACGTGGACGCCAAGGCGCCG 5205979 Query 13810 GCGACGAGTTCATCCGGGGCGTCTCGGC-CATCGCCAGGTGCTTCCCTAACGTGGCCCTG 13868 || | | || | || | ||| |||| | | | | |||||||| |||| ||| Sbjct 5205978 GCCCCCT-TCCAGCAGGCG-GTC-CGGCGCCTGGTGGGCTGCTTCCCCAACGCCTTCCTC 5205922 Query 13869 GCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGC 13928 ||| |||| || | ||||| |||||| | | ||| ||| |||||||||| Sbjct 5205921 GCCTCCCGGGTGGAGCGGGTGGTCTACGGCGGCGTGTCCCGCCTGCGGGCCGACCTCCAT 5205862 Query 13929 TGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGG 13988 |||||| | |||||| ||||| | || ||| | |||||||||||| || || Sbjct 5205861 TGCATGGCAGACCTGCTGGCCTCGGCTGTGCCCTGGCGCTACCTGCTCAACACCTGTGGC 5205802 Query 13989 ATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGC 14048 ||||||||| | |||||||||| ||||||||| ||| |||||||| ||| || || Sbjct 5205801 CAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCGGCTGCTGAAGGGCCTCGGGGGG 5205742 Query 14049 AAGAACG 14055 ||||||| Sbjct 5205741 AAGAACG 5205735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658730776372480