Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq138 104 2e-17 seq429 102 7e-17 >seq138 Length=3005399 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||| || || |||||||| | || || || ||||| ||| Sbjct 2870652 GTGGTGGAGGAGCTCTTCCGAGACGGCGTCAACTGGGGCAGGATCGTGGCCTTCTTCGAG 2870593 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||| ||||| |||||||| | | || | ||||||| |||| | Sbjct 2870592 TTCGGCGGCGTGATGTGCGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTCGTAGACAGC 2870533 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||||| |||||||| || Sbjct 2870532 ATCGCCGCCTGGATGACCGA 2870513 >seq429 Length=9448605 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || ||||||||||| || | || |||||||| | ||| ||||| Sbjct 339937 AGCCCTGTGACATGGGCAATCATGTAAGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 339996 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | || ||||| || | ||||||||| | || |||||| | Sbjct 339997 ACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCGTTTAGA 340056 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || |||||||||||| |||| Sbjct 340057 ACATAGAACTGGCAAAGGGCATGGCATGGAGGCAGAGCCAT 340097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414471632380972