Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq396 107 1e-18
seq841 86.0 4e-12
>seq396
Length=9930490
Score = 107 bits (118), Expect = 1e-18
Identities = 146/201 (73%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||||||||| || || ||||| || || || || ||||| || || ||||| ||
Sbjct 5100734 AAAATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 5100793
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| |||| ||| | || | || || ||||| ||||| | || || ||
Sbjct 5100794 AGTGACACCATTGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 5100852
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| ||| | | || ||||| ||||| || |||||||||| |||||| || || ||
Sbjct 5100853 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCTGACTA 5100912
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || || |||||
Sbjct 5100913 CAACATCCAGAAGGAATCCAC 5100933
>seq841
Length=5312791
Score = 86.0 bits (94), Expect = 4e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||| || || || ||||| || || || || |||||||| || ||||| ||
Sbjct 4754438 AAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTTGAGCCC 4754379
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | || | |||| || || ||||| ||||| | || || |||
Sbjct 4754378 AGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 4754319
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| | | || || || ||||| || |||||||| | ||||| | || |||
Sbjct 4754318 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 4754259
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || || |||||
Sbjct 4754258 AACATCCAGAAGGAATCCAC 4754239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338005385759684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |