Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq396 107 1e-18 seq841 86.0 4e-12 >seq396 Length=9930490 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| || || ||||| || || || || ||||| || || ||||| || Sbjct 5100734 AAAATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 5100793 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || || ||||| ||||| | || || || Sbjct 5100794 AGTGACACCATTGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCCGA 5100852 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || ||||| ||||| || |||||||||| |||||| || || || Sbjct 5100853 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCTTGTCTGACTA 5100912 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 5100913 CAACATCCAGAAGGAATCCAC 5100933 >seq841 Length=5312791 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| || || || || |||||||| || ||||| || Sbjct 4754438 AAAATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTTGAGCCC 4754379 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || || ||||| ||||| | || || ||| Sbjct 4754378 AGTGACACCATCGAGAATGTAAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 4754319 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || || || ||||| || |||||||| | ||||| | || ||| Sbjct 4754318 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 4754259 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || || ||||| Sbjct 4754258 AACATCCAGAAGGAATCCAC 4754239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005385759684