Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08-
04] 1,023 sequences; 1,178,409,481 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq841 123 6e-23
seq396 105 2e-17
>seq841
Length=5312791
Score = 123 bits (136), Expect = 6e-23
Identities = 159/218 (73%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||| || || || || || ||||||||||| || | | || | |||||||
Sbjct 4754224 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4754283
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| ||||||||||| || | | || |||||||| ||
Sbjct 4754284 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 4754343
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | |||| ||| ||| || |||||||| ||
Sbjct 4754344 TGGATCTTGGCCTTTACATTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGAGTGATG 4754400
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || |||||||| |||| |||||||||
Sbjct 4754401 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 4754438
Score = 118 bits (130), Expect = 2e-21
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||| || || || || || ||||||||||| || | | || | |||||||
Sbjct 4753378 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4753437
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| ||||||||||| || | | || |||||||| ||
Sbjct 4753438 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 4753497
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || |||||| |||| | | |||| ||| ||| ||||| || || ||
Sbjct 4753498 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTCTAGGGTGATG 4753554
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 4753555 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4753589
Score = 89.7 bits (98), Expect = 1e-12
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||| || || || || || ||||||||||| |||| | || | |||||||
Sbjct 4753606 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 4753665
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| ||||||||||| || | | || |||||||| ||
Sbjct 4753666 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 4753725
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044
|| || || |||||| |||| | | ||||
Sbjct 4753726 TGGATCTTGGCCTTGACATTCTCAATGGTGTC 4753757
>seq396
Length=9930490
Score = 105 bits (116), Expect = 2e-17
Identities = 155/218 (71%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||| || || || || || ||||||||||| || | || || | || |||
Sbjct 5100948 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGTCCGTCT 5100889
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| ||||||||||| || | | || |||||||| ||
Sbjct 5100888 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 5100829
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | |||| ||| ||| || ||||| || ||
Sbjct 5100828 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 5100772
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || |||||||| || | |||||||||
Sbjct 5100771 GTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATTTT 5100734
Score = 105 bits (116), Expect = 2e-17
Identities = 153/215 (71%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| |||||||| ||||| || || || ||||||||||| || | | || | || |||
Sbjct 5101176 AGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 5101117
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| ||||||||||| || | | || |||||||| ||
Sbjct 5101116 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 5101057
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || ||| |||| | | |||| ||| ||| || ||||| || ||
Sbjct 5101056 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATG 5101000
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || |||||||| |||| ||||||
Sbjct 5100999 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 5100965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153805676654433
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |