Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq396 127 1e-24 seq841 113 3e-20 >seq396 Length=9930490 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| || || || ||| ||||| ||||||||||| || | Sbjct 5101191 CCACCCCTCAGGCGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5101132 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| || |||||||||| | ||||||||| | || Sbjct 5101131 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 5101072 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||||| | | |||||||| || || ||| Sbjct 5101071 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 5101012 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 5101011 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 5100964 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| || || || ||| ||||| ||||||||||| || Sbjct 5100967 CATGCCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 5100908 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || || || |||| ||||||||||| || |||||||||| | ||||||||| | Sbjct 5100907 AGACAAGGTG-CGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGG 5100849 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| ||||| | | |||||||| || | Sbjct 5100848 GGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCT 5100789 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || || ||||||||||| || || ||||| Sbjct 5100788 CAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 5100737 >seq841 Length=5312791 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| | || ||| || || || ||| ||||| ||||||||||| || | Sbjct 4754209 CCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4754268 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || ||||||||||| || || ||||||| | ||||||||| | || Sbjct 4754269 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 4754328 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||| | | | |||||||| || || ||| Sbjct 4754329 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTCTCGATGGTGTCACTGGGCTCAACC 4754388 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| || || ||||||||||| ||||| ||||| Sbjct 4754389 TCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4754435 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| | || ||| || || || ||| ||||| ||||||||||| || | Sbjct 4753363 CCACCCCTCAAGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 4753422 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || ||||||||||| || || ||||||| | ||||||||| | || Sbjct 4753423 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 4753482 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||| | | | |||||||| || || || Sbjct 4753483 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 4753542 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 4753543 TCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 4753590 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || ||| || || || ||| ||||| ||||||||||| || Sbjct 4753587 CATGCCACCTCTAAGACGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTC 4753646 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || |||| | || ||||||||||| || || ||||||| | ||||||||| | Sbjct 4753647 GGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGG 4753706 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTT 44253 || | |||||||| ||| ||||| Sbjct 4753707 GGGAATGCCTTCCTTGTCCTGGATCTT 4753733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359985911707191