Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haliaeetus_20leucocephalus_20[refseq_20GCF_5F000737465.1_202014-08- 04] 1,023 sequences; 1,178,409,481 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq731 143 4e-29 seq307 116 5e-21 >seq731 Length=6069190 Score = 143 bits (158), Expect = 4e-29 Identities = 223/315 (71%), Gaps = 3/315 (1%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 4073388 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 4073447 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| || |||||||| |||||||||||| | |||| Sbjct 4073448 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 4073507 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || ||||| || || || | ||| | || Sbjct 4073508 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 4073567 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCC 8527 | ||||| ||||| || || || |||||||| | |||||| || | |||||||||| Sbjct 4073568 TTTCACCAAAGATTGCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 4073626 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | ||| || ||||| | ||||| || || || || ||||||||||| Sbjct 4073627 ATAGCATCAATGTCGCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 4073686 Query 8587 TTTATTAATAAAAAA 8601 ||||| || | ||| Sbjct 4073687 ATTATTGATGAGAAA 4073701 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | | | || |||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 4075393 ATGAGCCTACTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 4075452 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 4075453 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 4075512 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| || || |||| || || |||| | ||| || ||| || || | ||||| Sbjct 4075513 ACCAAACCGAACACCTCCTGCCCAACAGAAAACTGCAGGTGTTCAGGTACATGAGGAGGG 4075572 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || || |||||| Sbjct 4075573 TAGATCATATCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCGATCATC 4075632 Query 9484 TG 9485 || Sbjct 4075633 TG 4075634 >seq307 Length=10662554 Score = 116 bits (128), Expect = 5e-21 Identities = 182/255 (71%), Gaps = 4/255 (2%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || |||||||| ||||| ||||| Sbjct 1116773 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 1116832 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | || || || | |||||| || | ||||||| ||||||||||| Sbjct 1116833 TCCCGTTTCAGTATGTCACAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 1116892 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | || ||||| |||| || || | ||||| || | | | ||| Sbjct 1116893 CAGAGCCCCGGCAGAAGCCCAAACACCTCCTGGCCCATCGCCAGCTGCTTCTCCTTGGGG 1116952 Query 9412 ACTTCGGGA-GGATAGATCATGTGCACCTGGA-CGTCTTTGACCGAGGGGGGATACATTT 9469 | | | ||| || |||| |||||| | ||||| | || |||||| |||||| |||| | Sbjct 1116953 A-TGCTGGACGGGTAGACCATGTG-AACTGGAGCATCGGTGACCGTGGGGGGGTACACCT 1117010 Query 9470 CACCGTCAATCATCT 9484 | || || | || || Sbjct 1117011 CTCCATCCACCACCT 1117025 Score = 96.9 bits (106), Expect = 5e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 8372 TCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGG 8431 ||||| ||||| || ||||| ||||||||| | |||||||||||| ||| | | || Sbjct 1114399 TCTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGC 1114458 Query 8432 CCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8491 || || ||||| |||||||| || | ||| | ||||| || || || || | ||||| Sbjct 1114459 CCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCCCCAAAAATACCATTGGGT 1114518 Query 8492 CGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 |||| || || | || || || | || | ||||| ||| || | |||||| || Sbjct 1114519 TGGGGTTTCTCAAGCAGCAAGCCCGGATAAAACTCCAGAGCATCAATGTCTCCATA 1114574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716867632937920