Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq2715 127 1e-24
seq2693 98.7 7e-16
>seq2715
Length=3790167
Score = 127 bits (140), Expect = 1e-24
Identities = 91/105 (87%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || ||| ||||||| |||| |||||||||| |||||||||| ||||||||||| ||
Sbjct 3177309 CTTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCTGG 3177250
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTT 4394
||| |||||||| || ||||||||||| |||||| |||||||||
Sbjct 3177249 AATGGAGAACCACGTTTTTTTACCCATTATCACTGCATTCTGTTT 3177205
>seq2693
Length=3874444
Score = 98.7 bits (108), Expect = 7e-16
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| ||||||||||| |||||||||||||| || |||||||| ||||| | ||| || |
Sbjct 2851129 CTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCT 2851070
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||||| ||||| | ||||| | || | || ||||| ||||||||||
Sbjct 2851069 CCTCTCTGGTGCTGAAACCTTGCTTATCCAGGAACTCACGCGACCCATTAGCATCCCAAA 2851010
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181
| | ||| || ||| || |||||||||
Sbjct 2851009 TCTTCACACCTTTTGCAGAGAGCTCTTTG 2850981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361237930114514
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |