Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq3 140 4e-28 seq248 91.5 2e-13 >seq3 Length=7909516 Score = 140 bits (154), Expect = 4e-28 Identities = 184/253 (73%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||||||||||||||| | ||| ||||||||||| || |||||| ||| ||| Sbjct 6438633 GAACTTCTCGAAGTTCCAGGCGATGTCATTGCGGCACACCGGGGACCAGATGATGTACTG 6438692 Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262 |||| | ||| |||| | ||||||| || ||||| |||||| ||||| Sbjct 6438693 CGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGGGAAGGGCAGCGCCTCTTTCAGGAA 6438752 Query 83263 GGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320 || |||||| || || || |||| ||||| ||||||||||||||||| | | || Sbjct 6438753 GGTGAAGAGGGGGTGCGCATCCTT--CCCGTTCACCTCGCACTTCTCGAACATGGTGAAA 6438810 Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTC 83380 || |||| | | ||||| |||||||| ||||||| || || | |||||| | || Sbjct 6438811 TTAGGCTTGTATCCGTTGCCAGGACGAACGTGCTCGAGCATGGGAAGGATCTCATCGTTG 6438870 Query 83381 TGGGCGTTTTCCT 83393 | ||||||||| Sbjct 6438871 GTGCCGTTTTCCT 6438883 >seq248 Length=2580139 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || |||||||| || ||||| || ||||| ||||||| ||| | || Sbjct 2477754 TTACCTGGTATCCAAACTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 2477697 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | || || | ||| | ||| ||||| ||||| || ||| | |||||||| || | Sbjct 2477696 GCGGGCT-TGGAGTTGGTTGAGCTGGGTGTAATCCCGCACTGTGGTGCCTCAGAGCGAAG 2477638 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | ||||||||||| || | || |||||||| || Sbjct 2477637 CCACGTTCTCGATCAGGACCACGCGGCCCCGGAA 2477604 Score = 91.5 bits (100), Expect = 2e-13 Identities = 208/302 (69%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 83065 CTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CAG-CGGTGGCTGTACCTGCGCACGGGC 83122 || |||||||||||||| || || | ||| || ||| ||||||| | || | || Sbjct 2478156 CTGGATGTCGGGCTCCA--GCTGGGCTGTGGGCACACGGGGGCTGTAGCGCCGGAACGGT 2478099 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 || |||| ||||||| ||||||||| || ||||||| | |||| || | ||| Sbjct 2478098 TCCCCCTCAGGCCCCACCAGGAACTTCTCAAAATTCCAGGAGATGTCGGAACGCCGCACA 2478039 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGC 83241 || |||| | | | |||| ||| || || ||| || | ||||| || || Sbjct 2478038 GGGCTCCAGACGACAAAGCGGGGCTCGGCCATCAG-GTGTGCAGGCTCGTCAGCCGGTGC 2477980 Query 83242 CGGCAGG-GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTC 83298 |||||| | || | ||| ||||||| | ||||| || | | | |||| |||| Sbjct 2477979 GGGCAGGTGAGCCTTG-AGGTAGGCGAACACGGGATGGGTGTCACTCC--CGTTCACCTG 2477923 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||| ||| || | ||||| ||||||||||| ||| || || ||||||||||| Sbjct 2477922 GCACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCACCCCCGGGCCGCACGTGCTTCAG 2477863 Query 83359 GG 83360 || Sbjct 2477862 GG 2477861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608773863580560