Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq3 140 4e-28
seq248 91.5 2e-13
>seq3
Length=7909516
Score = 140 bits (154), Expect = 4e-28
Identities = 184/253 (73%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202
||||||||||||||||||||| | ||| ||||||||||| || |||||| ||| |||
Sbjct 6438633 GAACTTCTCGAAGTTCCAGGCGATGTCATTGCGGCACACCGGGGACCAGATGATGTACTG 6438692
Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262
|||| | ||| |||| | ||||||| || ||||| |||||| |||||
Sbjct 6438693 CGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGGGAAGGGCAGCGCCTCTTTCAGGAA 6438752
Query 83263 GGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAG 83320
|| |||||| || || || |||| ||||| ||||||||||||||||| | | ||
Sbjct 6438753 GGTGAAGAGGGGGTGCGCATCCTT--CCCGTTCACCTCGCACTTCTCGAACATGGTGAAA 6438810
Query 83321 TTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTC 83380
|| |||| | | ||||| |||||||| ||||||| || || | |||||| | ||
Sbjct 6438811 TTAGGCTTGTATCCGTTGCCAGGACGAACGTGCTCGAGCATGGGAAGGATCTCATCGTTG 6438870
Query 83381 TGGGCGTTTTCCT 83393
| |||||||||
Sbjct 6438871 GTGCCGTTTTCCT 6438883
>seq248
Length=2580139
Score = 91.5 bits (100), Expect = 2e-13
Identities = 114/154 (74%), Gaps = 3/154 (2%)
Strand=Plus/Minus
Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447
|| |||||| || |||||||| || ||||| || ||||| ||||||| ||| | ||
Sbjct 2477754 TTACCTGGTATCCAAACTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 2477697
Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507
| | | || || | ||| | ||| ||||| ||||| || ||| | |||||||| || |
Sbjct 2477696 GCGGGCT-TGGAGTTGGTTGAGCTGGGTGTAATCCCGCACTGTGGTGCCTCAGAGCGAAG 2477638
Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541
| ||||||||||| || | || |||||||| ||
Sbjct 2477637 CCACGTTCTCGATCAGGACCACGCGGCCCCGGAA 2477604
Score = 91.5 bits (100), Expect = 2e-13
Identities = 208/302 (69%), Gaps = 12/302 (4%)
Strand=Plus/Minus
Query 83065 CTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CAG-CGGTGGCTGTACCTGCGCACGGGC 83122
|| |||||||||||||| || || | ||| || ||| ||||||| | || | ||
Sbjct 2478156 CTGGATGTCGGGCTCCA--GCTGGGCTGTGGGCACACGGGGGCTGTAGCGCCGGAACGGT 2478099
Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182
|| |||| ||||||| ||||||||| || ||||||| | |||| || | |||
Sbjct 2478098 TCCCCCTCAGGCCCCACCAGGAACTTCTCAAAATTCCAGGAGATGTCGGAACGCCGCACA 2478039
Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGC 83241
|| |||| | | | |||| ||| || || ||| || | ||||| || ||
Sbjct 2478038 GGGCTCCAGACGACAAAGCGGGGCTCGGCCATCAG-GTGTGCAGGCTCGTCAGCCGGTGC 2477980
Query 83242 CGGCAGG-GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTC 83298
|||||| | || | ||| ||||||| | ||||| || | | | |||| ||||
Sbjct 2477979 GGGCAGGTGAGCCTTG-AGGTAGGCGAACACGGGATGGGTGTCACTCC--CGTTCACCTG 2477923
Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358
|||||||| ||| || | ||||| ||||||||||| ||| || || |||||||||||
Sbjct 2477922 GCACTTCTGGAACAGGGTGAAGTTGGGCTCGAAGCCACCCCCGGGCCGCACGTGCTTCAG 2477863
Query 83359 GG 83360
||
Sbjct 2477862 GG 2477861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608773863580560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |