Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq2693 95.1 8e-15
>seq2693
Length=3874444
Score = 95.1 bits (104), Expect = 8e-15
Identities = 110/148 (74%), Gaps = 8/148 (5%)
Strand=Plus/Minus
Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461
||||||||||||||||||||||| ||||| ||||| || ||||| | || || || |||
Sbjct 2851124 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 2851065
Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517
|| | |||||| ||||||| |||| || || ||||| |||||||||||
Sbjct 2851064 CTGGTGCTGAAACCTTGCTTATC----CAGGAACTCACGCGACCCATTAGCATCCCAAAT 2851009
Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545
| |||||| ||| | |||||||||
Sbjct 2851008 CTTCACACCTTTTGCAGAGAGCTCTTTG 2850981
Score = 82.4 bits (90), Expect = 5e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176
||||||||||| ||||| | || | || |||||||| ||||| ||||||||||| |||
Sbjct 2854755 GTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTAAAAGGCACTCCT 2854696
Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236
|| ||||| || | || || ||||| | || || || | | |||| |||||
Sbjct 2854695 AGACCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAG 2854636
Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271
||||| | | |||| || || ||||| |||||
Sbjct 2854635 AACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 2854601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346771261539980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |