Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq2317 138 2e-27 >seq2317 Length=688720 Score = 138 bits (152), Expect = 2e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954 || ||||||| ||| ||| | || ||||| || ||||| |||||||| ||||| ||||| Sbjct 295830 GCTTTATGGTGGTATTATGTCTCTAAAGGAATCGAATATTTGGATACAGTATTCTTCATT 295771 Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014 || ||||||||||||||||| ||||||| || || || ||||| ||||| || ||||| Sbjct 295770 CTGAGGAAAAAATTTAATCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 295711 Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || | | ||||| |||||||| ||| |||| || || || Sbjct 295710 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 295670 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||| ||| | |||| || || || || ||||| ||||| || ||||| || || Sbjct 292926 GGTGCAGTTTCATGTGACTATTGGCCACACAGCCATGTCTATTTATATTGATTGTCCTTT 292867 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| || |||||||| Sbjct 292866 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 292807 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 292806 TAACTTCTACTATCGGACATATAAG 292782 Score = 98.7 bits (108), Expect = 2e-15 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || || || |||||||| | ||| | ||||| ||||| |||||||||| |||||||| Sbjct 293559 GCTTTCTTCGGAGCTCAAATGAATGCATTTATTCATGTCATTATGTACATGTATTATGGA 293500 Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || ||||| || |||| || |||||| || || ||||||||||| ||| | || || Sbjct 293499 TTAGCAGCTTGCGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATATTTGACCAT 293441 Query 52176 AATGCAGTTGGTA 52188 | |||| |||||| Sbjct 293440 ATTGCAATTGGTA 293428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923162018560560