Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq2317 138 2e-27
>seq2317
Length=688720
Score = 138 bits (152), Expect = 2e-27
Identities = 127/161 (79%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 51895 GCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATA 51954
|| ||||||| ||| ||| | || ||||| || ||||| |||||||| ||||| |||||
Sbjct 295830 GCTTTATGGTGGTATTATGTCTCTAAAGGAATCGAATATTTGGATACAGTATTCTTCATT 295771
Query 51955 CTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTT 52014
|| ||||||||||||||||| ||||||| || || || ||||| ||||| || |||||
Sbjct 295770 CTGAGGAAAAAATTTAATCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 295711
Query 52015 ACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055
|| | | ||||| |||||||| ||| |||| || || ||
Sbjct 295710 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 295670
Score = 100 bits (110), Expect = 5e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244
||| ||||| ||| | |||| || || || || ||||| ||||| || ||||| || ||
Sbjct 292926 GGTGCAGTTTCATGTGACTATTGGCCACACAGCCATGTCTATTTATATTGATTGTCCTTT 292867
Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304
|| |||||||| || ||| || ||| ||||| || | | ||||| || ||||||||
Sbjct 292866 CCCTAAATGGATGCACTGGGGTGTCATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 292807
Query 52305 TAACTTCTATTTTAGAACATACAAG 52329
||||||||| | | | ||||| |||
Sbjct 292806 TAACTTCTACTATCGGACATATAAG 292782
Score = 98.7 bits (108), Expect = 2e-15
Identities = 103/133 (77%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|| || || |||||||| | ||| | ||||| ||||| |||||||||| ||||||||
Sbjct 293559 GCTTTCTTCGGAGCTCAAATGAATGCATTTATTCATGTCATTATGTACATGTATTATGGA 293500
Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175
| || ||||| || |||| || |||||| || || ||||||||||| ||| | || ||
Sbjct 293499 TTAGCAGCTTGCGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATATTTGACCAT 293441
Query 52176 AATGCAGTTGGTA 52188
| |||| ||||||
Sbjct 293440 ATTGCAATTGGTA 293428
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923162018560560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |