Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq2537 149 7e-31 >seq2537 Length=4306903 Score = 149 bits (164), Expect = 7e-31 Identities = 161/208 (77%), Gaps = 13/208 (6%) Strand=Plus/Plus Query 1917 GGTCCTCGCCCGC-----AGGCCGCGGTCGGCCGGCACC-CGCCATTGCCGCCGCGAAGA 1970 || |||||||||| |||||||||||||| ||| | |||| |||||||||||||| Sbjct 2395306 GGCCCTCGCCCGCCGTGGAGGCCGCGGTCGGCGGGCTCAGCGCCGCTGCCGCCGCGAAGA 2395365 Query 1971 GTTCGCCTCTGTCAGCCTCGGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgccccca 2030 | ||| |||||||||||||||||| | |||| | ||| | || ||| || | ||||| Sbjct 2395366 GCTCGTCTCTGTCAGCCTCGGCGG-GGCCGGCA---GCGCGGGGCAGCCGCGGGGCCCCA 2395421 Query 2031 gcagagcaacacgggagcggcgcccccggg-gc--aacccccgcgccccccTGCGCCGTG 2087 ||||||||| ||||| |||||||| | ||| || | | |||| ||||||| |||||| Sbjct 2395422 GCAGAGCAAAACGGGCGCGGCGCCGCTGGGCGCTGAGCAGCCGCCGCCCCCTGAGCCGTG 2395481 Query 2088 GGGCGCGCGGACGGCGTCGCTCCCACAC 2115 ||| ||| || |||| ||| || |||| Sbjct 2395482 GGGTGCGTGGCGGGCGCCGCCCCGACAC 2395509 Score = 149 bits (164), Expect = 7e-31 Identities = 161/208 (77%), Gaps = 13/208 (6%) Strand=Plus/Minus Query 139505 GTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggtt--gc-cc 139561 |||| || ||| |||| || ||| ||||||||| ||||||| |||| | | || || Sbjct 2395509 GTGTCGGGGCGGCGCCCGCCACGCACCCCACGGCTCAGGGGGCGGCGGCTGCTCAGCGCC 2395450 Query 139562 cgggggcgccgctcccgtgttgctctgctgggggcgcggggccgcgcgcCGCATCTCCCG 139621 | | |||||||| ||||| |||||||||||||| | || ||| || | ||| | ||| Sbjct 2395449 CAGCGGCGCCGCGCCCGTTTTGCTCTGCTGGGGCCCCGCGGCTGCCCCGCGC---TGCCG 2395393 Query 139622 GGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCG-GGTGCCGGCCG 139680 | | |||||||||||||||||| ||| ||||||||||||||| |||| | ||| |||| Sbjct 2395392 GCC-CCGCCGAGGCTGACAGAGACGAGCTCTTCGCGGCGGCAGCGGCGCTGAGCCCGCCG 2395334 Query 139681 ACCGCGGCCT-----GCGGGCGAGGACC 139703 |||||||||| |||||||||| || Sbjct 2395333 ACCGCGGCCTCCACGGCGGGCGAGGGCC 2395306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569047360332960