Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_002229.3
Length=177874
Score E
Sequences producing significant alignments: (Bits) Value
seq2537 149 7e-31
>seq2537
Length=4306903
Score = 149 bits (164), Expect = 7e-31
Identities = 161/208 (77%), Gaps = 13/208 (6%)
Strand=Plus/Plus
Query 1917 GGTCCTCGCCCGC-----AGGCCGCGGTCGGCCGGCACC-CGCCATTGCCGCCGCGAAGA 1970
|| |||||||||| |||||||||||||| ||| | |||| ||||||||||||||
Sbjct 2395306 GGCCCTCGCCCGCCGTGGAGGCCGCGGTCGGCGGGCTCAGCGCCGCTGCCGCCGCGAAGA 2395365
Query 1971 GTTCGCCTCTGTCAGCCTCGGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgccccca 2030
| ||| |||||||||||||||||| | |||| | ||| | || ||| || | |||||
Sbjct 2395366 GCTCGTCTCTGTCAGCCTCGGCGG-GGCCGGCA---GCGCGGGGCAGCCGCGGGGCCCCA 2395421
Query 2031 gcagagcaacacgggagcggcgcccccggg-gc--aacccccgcgccccccTGCGCCGTG 2087
||||||||| ||||| |||||||| | ||| || | | |||| ||||||| ||||||
Sbjct 2395422 GCAGAGCAAAACGGGCGCGGCGCCGCTGGGCGCTGAGCAGCCGCCGCCCCCTGAGCCGTG 2395481
Query 2088 GGGCGCGCGGACGGCGTCGCTCCCACAC 2115
||| ||| || |||| ||| || ||||
Sbjct 2395482 GGGTGCGTGGCGGGCGCCGCCCCGACAC 2395509
Score = 149 bits (164), Expect = 7e-31
Identities = 161/208 (77%), Gaps = 13/208 (6%)
Strand=Plus/Minus
Query 139505 GTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggtt--gc-cc 139561
|||| || ||| |||| || ||| ||||||||| ||||||| |||| | | || ||
Sbjct 2395509 GTGTCGGGGCGGCGCCCGCCACGCACCCCACGGCTCAGGGGGCGGCGGCTGCTCAGCGCC 2395450
Query 139562 cgggggcgccgctcccgtgttgctctgctgggggcgcggggccgcgcgcCGCATCTCCCG 139621
| | |||||||| ||||| |||||||||||||| | || ||| || | ||| | |||
Sbjct 2395449 CAGCGGCGCCGCGCCCGTTTTGCTCTGCTGGGGCCCCGCGGCTGCCCCGCGC---TGCCG 2395393
Query 139622 GGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCG-GGTGCCGGCCG 139680
| | |||||||||||||||||| ||| ||||||||||||||| |||| | ||| ||||
Sbjct 2395392 GCC-CCGCCGAGGCTGACAGAGACGAGCTCTTCGCGGCGGCAGCGGCGCTGAGCCCGCCG 2395334
Query 139681 ACCGCGGCCT-----GCGGGCGAGGACC 139703
|||||||||| |||||||||| ||
Sbjct 2395333 ACCGCGGCCTCCACGGCGGGCGAGGGCC 2395306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569047360332960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |