Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq2110 242 4e-59 >seq2110 Length=5762521 Score = 242 bits (268), Expect = 4e-59 Identities = 312/435 (72%), Gaps = 0/435 (0%) Strand=Plus/Minus Query 125079 GCCGCTCATGCCCGCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCC 125138 ||||||| | |||| ||| ||| ||||||||||||||| || || ||||||||| Sbjct 1262042 GCCGCTCCCCGCTGCCCCGGCCCCGCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCC 1261983 Query 125139 CTGCTCTTCGGCCAGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACA 125198 |||| |||||||||||||||||||| ||||||| || || ||||| || || Sbjct 1261982 GCGCTCCTCGGCCAGGTACGCGGCCAGGTGCGCGGCCAGGCAGCGCGGCCCGTCGCTGCA 1261923 Query 125199 GCCGTTTTCGTACAGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCG 125258 ||| ||| |||||| | ||||||| |||| ||| || | | |||||| || Sbjct 1261922 GCCCCGCTCGGCCAGCGCGGCCGCCAGCGTGCCGGCGAACACCACGAGCGCCAGCAGCCG 1261863 Query 125259 ACCCCAGTTGAAGCCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAA 125318 |||||||||| ||||| ||| | || | | | |||| || |||| || Sbjct 1261862 GCCCCAGTTGAGGCCGCCGTCGGCCTCCAGCTGCGCCGCCACCCTGCCCAGCAGCGCGGC 1261803 Query 125319 CGCTGCCTGCGTGCCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCG 125378 ||| || ||| || | | ||| | ||||||||||||||| |||||||||| ||| | Sbjct 1261802 CGCCTCCCGCGGCTCGGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCCTG 1261743 Query 125379 CCGCTCCAGCTCGGCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCC 125438 ||||||||||||||||||||| ||||| || || || || ||| || | Sbjct 1261742 CCGCTCCAGCTCGGCCGCCGCCCGCCGCAGCGCGGCCGCCGTGGGGCTGGGGGGCAGCGC 1261683 Query 125439 TTCCTTGCCGCAGCAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAG 125498 | |||||| || |||||||||||||||||||||||||| |||||| || |||||||| Sbjct 1261682 GGCGCTGCCGCTGCGGTGCTGGAAGTAATCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAG 1261623 Query 125499 GGAGTCAGCCATGGC 125513 ||| || |||||| Sbjct 1261622 CGAGCGAGGCATGGC 1261608 Score = 233 bits (258), Expect = 2e-56 Identities = 310/435 (71%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| || ||| |||||||| || |||||| |||||||||||||||||||||||||| Sbjct 1261608 GCCATGCCTCGCTCGCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGATTACTTCCAGCAC 1261667 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || |||||| | | || ||| || || || |||||||| | ||||||||| || Sbjct 1261668 CGCAGCGGCAGCGCCGCGCTGCCCCCCAGCCCCACGGCGGCCGCGCTGCGGCGGGCGGCG 1261727 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 ||||||| ||| |||||||||| ||||||||||||||| | ||| | | | Sbjct 1261728 GCCGAGCTGGAGCGGCAGGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 1261787 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| || |||| || |||| | | | || | ||| || Sbjct 1261788 GAGCCGCGGGAGGCGGCCGCGCTGCTGGGCAGGGTGGCGGCGCAGCTGGAGGCCGACGGC 1261847 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||||||||| || |||||| | | || ||| |||| ||||||| | ||| Sbjct 1261848 GGCCTCAACTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCGCCGGCACGCTGGCGGCCGCG 1261907 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| ||||| || ||||| || || ||||||| |||||||||||| Sbjct 1261908 CTGGCCGAGCGGGGCTGCAGCGACGGGCCGCGCTGCCTGGCCGCGCACCTGGCCGCGTAC 1261967 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| |||| ||||||||| || || ||||||||||||||| ||| ||| || Sbjct 1261968 CTGGCCGAGGAGCGCGGCGAGTGGCTGGAGGCGCACGGCGGATGGGTGAGCGGGGCCGGG 1262027 Query 157503 GCGGGCATGAGCGGC 157517 || | ||||||| Sbjct 1262028 GCAGCGGGGAGCGGC 1262042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509164816492800