Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_002641.1
Length=159160
Score E
Sequences producing significant alignments: (Bits) Value
seq2110 242 4e-59
>seq2110
Length=5762521
Score = 242 bits (268), Expect = 4e-59
Identities = 312/435 (72%), Gaps = 0/435 (0%)
Strand=Plus/Minus
Query 125079 GCCGCTCATGCCCGCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCC 125138
||||||| | |||| ||| ||| ||||||||||||||| || || |||||||||
Sbjct 1262042 GCCGCTCCCCGCTGCCCCGGCCCCGCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCC 1261983
Query 125139 CTGCTCTTCGGCCAGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACA 125198
|||| |||||||||||||||||||| ||||||| || || ||||| || ||
Sbjct 1261982 GCGCTCCTCGGCCAGGTACGCGGCCAGGTGCGCGGCCAGGCAGCGCGGCCCGTCGCTGCA 1261923
Query 125199 GCCGTTTTCGTACAGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCG 125258
||| ||| |||||| | ||||||| |||| ||| || | | |||||| ||
Sbjct 1261922 GCCCCGCTCGGCCAGCGCGGCCGCCAGCGTGCCGGCGAACACCACGAGCGCCAGCAGCCG 1261863
Query 125259 ACCCCAGTTGAAGCCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAA 125318
|||||||||| ||||| ||| | || | | | |||| || |||| ||
Sbjct 1261862 GCCCCAGTTGAGGCCGCCGTCGGCCTCCAGCTGCGCCGCCACCCTGCCCAGCAGCGCGGC 1261803
Query 125319 CGCTGCCTGCGTGCCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCG 125378
||| || ||| || | | ||| | ||||||||||||||| |||||||||| ||| |
Sbjct 1261802 CGCCTCCCGCGGCTCGGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCCTG 1261743
Query 125379 CCGCTCCAGCTCGGCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCC 125438
||||||||||||||||||||| ||||| || || || || ||| || |
Sbjct 1261742 CCGCTCCAGCTCGGCCGCCGCCCGCCGCAGCGCGGCCGCCGTGGGGCTGGGGGGCAGCGC 1261683
Query 125439 TTCCTTGCCGCAGCAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAG 125498
| |||||| || |||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 1261682 GGCGCTGCCGCTGCGGTGCTGGAAGTAATCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAG 1261623
Query 125499 GGAGTCAGCCATGGC 125513
||| || ||||||
Sbjct 1261622 CGAGCGAGGCATGGC 1261608
Score = 233 bits (258), Expect = 2e-56
Identities = 310/435 (71%), Gaps = 0/435 (0%)
Strand=Plus/Plus
Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142
|||||| || ||| |||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 1261608 GCCATGCCTCGCTCGCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGATTACTTCCAGCAC 1261667
Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202
|| |||||| | | || ||| || || || |||||||| | ||||||||| ||
Sbjct 1261668 CGCAGCGGCAGCGCCGCGCTGCCCCCCAGCCCCACGGCGGCCGCGCTGCGGCGGGCGGCG 1261727
Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262
||||||| ||| |||||||||| ||||||||||||||| | ||| | | |
Sbjct 1261728 GCCGAGCTGGAGCGGCAGGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 1261787
Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322
| ||| || ||| || |||| || |||| | | | || | ||| ||
Sbjct 1261788 GAGCCGCGGGAGGCGGCCGCGCTGCTGGGCAGGGTGGCGGCGCAGCTGGAGGCCGACGGC 1261847
Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382
||| |||||||||| || |||||| | | || ||| |||| ||||||| | |||
Sbjct 1261848 GGCCTCAACTGGGGCCGGCTGCTGGCGCTCGTGGTGTTCGCCGGCACGCTGGCGGCCGCG 1261907
Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442
||| ||| ||||| || ||||| || || ||||||| ||||||||||||
Sbjct 1261908 CTGGCCGAGCGGGGCTGCAGCGACGGGCCGCGCTGCCTGGCCGCGCACCTGGCCGCGTAC 1261967
Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502
|||||||| |||| ||||||||| || || ||||||||||||||| ||| ||| ||
Sbjct 1261968 CTGGCCGAGGAGCGCGGCGAGTGGCTGGAGGCGCACGGCGGATGGGTGAGCGGGGCCGGG 1262027
Query 157503 GCGGGCATGAGCGGC 157517
|| | |||||||
Sbjct 1262028 GCAGCGGGGAGCGGC 1262042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 509164816492800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |