Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq2892 379 1e-100
seq1055 82.4 5e-11
>seq2892
Length=3222183
Score = 379 bits (420), Expect = 1e-100
Identities = 752/1108 (68%), Gaps = 14/1108 (1%)
Strand=Plus/Plus
Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581
||||||||| || ||| || || |||||||| | || | | |||| | || |
Sbjct 382668 CATCAACTGCTCGGGGGTCGTCCGCGGGGACCACAAGGCCATCGAAGAGGCGCAGCTCAA 382727
Query 107582 CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAAC 107641
|||||||||||||||||| | || | | || || | | | ||||| ||||| ||
Sbjct 382728 CAACCTGGAAGTGAAGAATAGAAGGGCTTCGCTGACGCCCGGCGAGTACCTGAACATTAC 382787
Query 107642 CAGAGACTGT-GAGCGCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGAGTA 107697
|| ||||| |||| |||||||| ||| || | ||| ||||||| || ||
Sbjct 382788 GAGGGACTGCAGAGC-CTTCAAGGAGACCC---GGCGCTACATCGAGTTCCCGCTCAGCC 382843
Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757
| || ||| || |||||||| |||||||| || | | || | || || || | |
Sbjct 382844 AGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATTATCATTCACCACAAAATCGACATGT 382903
Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817
|||| ||||| |||||| || | || || || ||||| | ||||||||||| || ||
Sbjct 382904 TTGAGCGGCTCCTGCGATCCATCTACGCTCCCCAGAATGTTTACTGTGTCCATGTAGACA 382963
Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877
|| ||||| | | ||| | |||| || ||||||| | ||||||||||||| |
Sbjct 382964 GCAAATCCCCGGCCGCCTTCCAGAAGGCCGTGCGGGCCATTGCTGCCTGCTTCCCCAACG 383023
Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937
||||| ||||||| ||| ||||| |||||| |||||||| | |||| || |
Sbjct 383024 TCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCCACCTGGTCCCGGCTGCAGGCCG 383083
Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATA 107997
|||| ||||| ||| | ||| | || |||||| | ||||||||| ||| | | || |
Sbjct 383084 ACCTCAACTGCATGCAGGACCTCCTGCAGAGCCCCGTGCCATGGCGCTACCTGATCAACA 383143
Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057
| ||||| || ||||||||||| |||||||| |||||||| |||| || || || ||
Sbjct 383144 CCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATAGTCCGGGTGCTGCAGGTGC 383203
Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117
|| |||| | |||| ||||||| ||| || || | |||| | | ||||||
Sbjct 383204 TGCAGGGCCACAACACCGTGGAGTCGGAGAGGCCCTCGGCCGCCAAGCAGCAGCGCTGGG 383263
Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCC 108177
| |||| | | |||||| || || | | | || | ||| ||| || || |
Sbjct 383264 AGTACCACCACGAGGTGGGCGAGACCATCTCTCGCACTGCCCAGAAGAAACTGCCCCCGC 383323
Query 108178 CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCC 108237
| | | | ||||||||||| || | || || | | | | || | ||| || |
Sbjct 383324 CCCACAGCTACCCCATGTTCACGGGCAGCGCGTACAACGCCGTCACACGGGACTTCGTGC 383383
Query 108238 AACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATA 108297
| ||||||| || ||||| | | | | | | | || ||| ||| |||| ||| |
Sbjct 383384 AGTATGTCTTCGAGAACCCCACAGCACGGAAGTTCCTCGAGTGGTCCAAGGACAGCTACA 383443
Query 108298 GCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCC---TGGCTCTG 108354
|||| ||||| || ||||||||||||| | || ||| | |||| ||| ||
Sbjct 383444 GCCCTGACGAGTACGTCTGGGCCACCCTGAACCGCATGCCGGGCGTGCCGGGGGGCACTC 383503
Query 108355 TTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGT 108414
| ||| | ||||| || |||| ||||||| ||| | || | || |||||||
Sbjct 383504 CCCTCAGCGA---CAAGTTCCAGCTCTCGGACATGAACGCCCTTCCCCGCCTGGTCAAGT 383560
Query 108415 GGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCC 108474
|| |||||| ||||| ||| ||| || ||| ||||| || | |||||| | || ||
Sbjct 383561 GGGAGTACCTGGAGGGTGATATCACCAAGGGCGCGCCCTACCCGCCCTGCACCGGCCGCC 383620
Query 108475 ATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATC 108534
| | | | |||||||||| ||||||| || ||| || |||||| || ||| | || |
Sbjct 383621 ACCAGCGCTCCATCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTGCAGCAGCACC 383680
Query 108535 ACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAG 108594
| |||||||| |||||||| ||||| |||||| ||| | | | ||||| | || |
Sbjct 383681 ATCTCTTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCGGCCATCCAGTGTCTGGAGG 383740
Query 108595 AGTACCTACGTCATAAGGCCATCTATGG 108622
||||||| || || |||||| | || ||
Sbjct 383741 AGTACCTGCGCCACAAGGCCCTGTACGG 383768
>seq1055
Length=1677871
Score = 82.4 bits (90), Expect = 5e-11
Identities = 226/343 (66%), Gaps = 4/343 (1%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || || || ||||| ||| || || ||||| ||||| || ||||| || | ||
Sbjct 333776 CCTCTCAGCAACGAAGAAGCAGAATTTCCAATTGCTTACTCAATTGTGGTTTATCACAAA 333835
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||| | |||| | || || || | | |||| || ||||| | || || |
Sbjct 333836 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGTTCCACAGAATTTTTATTGCATT 333895
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| || || ||||| ||||| | || | || || |||| || | || ||
Sbjct 333896 CATGTAGACAAAAAGTCTCCAGAATCATTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 333955
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
|| |||||||| || |||| |||| | ||||| ||||| || ||| ||||
Sbjct 333956 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTGGTATATGCTTCATGGAGCAGA 334015
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
|||||||| ||| | ||||| ||| |||| | || |||| ||| | | ||||| |
Sbjct 334016 GTGCAAGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 334073
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028
|| || | || ||| || | ||||| || |||||||||||
Sbjct 334074 ACCTAATAAACCTATGTGGTATGGACTTTCCTATAAAGACCAA 334116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348256006998636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |