Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2892 379 1e-100 seq1055 82.4 5e-11 >seq2892 Length=3222183 Score = 379 bits (420), Expect = 1e-100 Identities = 752/1108 (68%), Gaps = 14/1108 (1%) Strand=Plus/Plus Query 107522 CATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGA 107581 ||||||||| || ||| || || |||||||| | || | | |||| | || | Sbjct 382668 CATCAACTGCTCGGGGGTCGTCCGCGGGGACCACAAGGCCATCGAAGAGGCGCAGCTCAA 382727 Query 107582 CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAAC 107641 |||||||||||||||||| | || | | || || | | | ||||| ||||| || Sbjct 382728 CAACCTGGAAGTGAAGAATAGAAGGGCTTCGCTGACGCCCGGCGAGTACCTGAACATTAC 382787 Query 107642 CAGAGACTGT-GAGCGCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGAGTA 107697 || ||||| |||| |||||||| ||| || | ||| ||||||| || || Sbjct 382788 GAGGGACTGCAGAGC-CTTCAAGGAGACCC---GGCGCTACATCGAGTTCCCGCTCAGCC 382843 Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 | || ||| || |||||||| |||||||| || | | || | || || || | | Sbjct 382844 AGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATTATCATTCACCACAAAATCGACATGT 382903 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 |||| ||||| |||||| || | || || || ||||| | ||||||||||| || || Sbjct 382904 TTGAGCGGCTCCTGCGATCCATCTACGCTCCCCAGAATGTTTACTGTGTCCATGTAGACA 382963 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATG 107877 || ||||| | | ||| | |||| || ||||||| | ||||||||||||| | Sbjct 382964 GCAAATCCCCGGCCGCCTTCCAGAAGGCCGTGCGGGCCATTGCTGCCTGCTTCCCCAACG 383023 Query 107878 TCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTG 107937 ||||| ||||||| ||| ||||| |||||| |||||||| | |||| || | Sbjct 383024 TCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCCACCTGGTCCCGGCTGCAGGCCG 383083 Query 107938 ACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATA 107997 |||| ||||| ||| | ||| | || |||||| | ||||||||| ||| | | || | Sbjct 383084 ACCTCAACTGCATGCAGGACCTCCTGCAGAGCCCCGTGCCATGGCGCTACCTGATCAACA 383143 Query 107998 CATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGT 108057 | ||||| || ||||||||||| |||||||| |||||||| |||| || || || || Sbjct 383144 CCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATAGTCCGGGTGCTGCAGGTGC 383203 Query 108058 TGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGA 108117 || |||| | |||| ||||||| ||| || || | |||| | | |||||| Sbjct 383204 TGCAGGGCCACAACACCGTGGAGTCGGAGAGGCCCTCGGCCGCCAAGCAGCAGCGCTGGG 383263 Query 108118 AATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCC 108177 | |||| | | |||||| || || | | | || | ||| ||| || || | Sbjct 383264 AGTACCACCACGAGGTGGGCGAGACCATCTCTCGCACTGCCCAGAAGAAACTGCCCCCGC 383323 Query 108178 CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCC 108237 | | | | ||||||||||| || | || || | | | | || | ||| || | Sbjct 383324 CCCACAGCTACCCCATGTTCACGGGCAGCGCGTACAACGCCGTCACACGGGACTTCGTGC 383383 Query 108238 AACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATA 108297 | ||||||| || ||||| | | | | | | | || ||| ||| |||| ||| | Sbjct 383384 AGTATGTCTTCGAGAACCCCACAGCACGGAAGTTCCTCGAGTGGTCCAAGGACAGCTACA 383443 Query 108298 GCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCC---TGGCTCTG 108354 |||| ||||| || ||||||||||||| | || ||| | |||| ||| || Sbjct 383444 GCCCTGACGAGTACGTCTGGGCCACCCTGAACCGCATGCCGGGCGTGCCGGGGGGCACTC 383503 Query 108355 TTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGT 108414 | ||| | ||||| || |||| ||||||| ||| | || | || ||||||| Sbjct 383504 CCCTCAGCGA---CAAGTTCCAGCTCTCGGACATGAACGCCCTTCCCCGCCTGGTCAAGT 383560 Query 108415 GGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCC 108474 || |||||| ||||| ||| ||| || ||| ||||| || | |||||| | || || Sbjct 383561 GGGAGTACCTGGAGGGTGATATCACCAAGGGCGCGCCCTACCCGCCCTGCACCGGCCGCC 383620 Query 108475 ATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATC 108534 | | | | |||||||||| ||||||| || ||| || |||||| || ||| | || | Sbjct 383621 ACCAGCGCTCCATCTGCATCTACGGGGTGGGCGACGTGCCCTGGATGCTGCAGCAGCACC 383680 Query 108535 ACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAG 108594 | |||||||| |||||||| ||||| |||||| ||| | | | ||||| | || | Sbjct 383681 ATCTCTTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCGGCCATCCAGTGTCTGGAGG 383740 Query 108595 AGTACCTACGTCATAAGGCCATCTATGG 108622 ||||||| || || |||||| | || || Sbjct 383741 AGTACCTGCGCCACAAGGCCCTGTACGG 383768 >seq1055 Length=1677871 Score = 82.4 bits (90), Expect = 5e-11 Identities = 226/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 333776 CCTCTCAGCAACGAAGAAGCAGAATTTCCAATTGCTTACTCAATTGTGGTTTATCACAAA 333835 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | |||| || ||||| | || || | Sbjct 333836 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGTTCCACAGAATTTTTATTGCATT 333895 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| | || | || || |||| || | || || Sbjct 333896 CATGTAGACAAAAAGTCTCCAGAATCATTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 333955 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | ||||| ||||| || ||| |||| Sbjct 333956 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTGGTATATGCTTCATGGAGCAGA 334015 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 |||||||| ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 334016 GTGCAAGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 334073 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || ||| || | ||||| || ||||||||||| Sbjct 334074 ACCTAATAAACCTATGTGGTATGGACTTTCCTATAAAGACCAA 334116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348256006998636