Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq281 98.7 8e-16 >seq281 Length=2586918 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| |||||||| ||||||||||| || ||| | || ||| Sbjct 2063273 ACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCCTCC 2063332 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | |||||||| ||| Sbjct 2063333 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGG 2063392 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| || |||||| Sbjct 2063393 ATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTG 2063452 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| || || ||||| Sbjct 2063453 CCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481 Score = 93.3 bits (102), Expect = 3e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || || || || || |||| || ||| ||||| ||||| | || |||||| Sbjct 2064618 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTG 2064677 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || ||| || | | | |||| | ||||||||| | ||| || Sbjct 2064678 TCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 2064737 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| ||||| |||||||||||||| ||||||||| Sbjct 2064738 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 2064776 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||| |||||| ||| |||||||| ||||||||||| Sbjct 2063483 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 2063542 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || || || || |||| || ||| ||||| ||||| Sbjct 2063543 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 2063602 Query 45230 ACACCCTCCTTGTCC 45244 | ||| ||||||||| Sbjct 2063603 ATACCTTCCTTGTCC 2063617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395060687653294