Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2246 123 2e-23
seq1378 102 7e-17
>seq2246
Length=973789
Score = 123 bits (136), Expect = 2e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105
||||||| || ||| ||||| || || || ||||| || || ||||| ||||| || |
Sbjct 490291 CCACCTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 490350
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
|||||| || ||||||||| || | ||||| || ||||||||||||||||| || |
Sbjct 490351 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 490410
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
|||| |||||| ||| ||||||||||| ||
Sbjct 490411 TGCCAGTCTCGGTCTGGGACTCGATGATGGC 490441
Score = 105 bits (116), Expect = 6e-18
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
|||| || || |||| || ||||| || ||||| || || ||||||| || | || |
Sbjct 491554 TTTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTAGCTC 491613
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
|| ||| ||||| || |||||||| ||||| |||| || || || | |||| ||||
Sbjct 491614 GCTGCTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCC 491673
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
||||||| ||||| | |||||| || || |||||||
Sbjct 491674 ACGGCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 491709
>seq1378
Length=1476964
Score = 102 bits (112), Expect = 7e-17
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248
||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || ||||| ||
Sbjct 1379763 AAAAATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCC 1379704
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
|||| |||| | |||||| | || ||||||||||||| | || || ||
Sbjct 1379703 CAGTGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGA 1379644
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||| | || || || |||||||| ||| |||||||
Sbjct 1379643 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 1379605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445749605750880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |