Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq890 114 2e-20
seq334 114 2e-20
seq2246 86.0 8e-12
>seq890
Length=1787418
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || || || || | ||| ||||| || || | ||| |
Sbjct 1673510 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCT 1673569
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||||||||| | ||| || || || ||||||||||| ||||| |||||||||||||
Sbjct 1673570 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1673629
Query 33724 CAATAAGTCTCTCTCC 33739
||| | |||||| ||
Sbjct 1673630 CAACCACTCTCTCACC 1673645
>seq334
Length=7684865
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| |||||||| || | ||| |||||||| |||||||| ||||||| || | ||||
Sbjct 6125973 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 6126032
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| |||||||| || || || || || || ||||||||||||||||| || || |||||||
Sbjct 6126033 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 6126092
Query 33724 C 33724
|
Sbjct 6126093 C 6126093
Score = 82.4 bits (90), Expect = 1e-10
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335
||||| |||||||| | || |||||||| || || || || || ||||| || || |||
Sbjct 6124749 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCT 6124808
Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370
|||| || || ||||||||||| ||||| |||||
Sbjct 6124809 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 6124843
>seq2246
Length=973789
Score = 86.0 bits (94), Expect = 8e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325
|||||| ||||| ||||||||||| ||||| || || | || || || || | || ||
Sbjct 491558 CACTCGCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTAGCTCGCTG 491617
Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385
|| || || ||||| ||||| || | || |||||| | | || || | ||||||||
Sbjct 491618 CTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 491677
Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412
|||| ||| ||||| | | | |||||
Sbjct 491678 CTCCAGGTAGATGGCAAAAGCCCCAGG 491704
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172
|||| ||||| || ||||| || || || || || | || || || || ||||| |
Sbjct 482781 TCCAGCCGTAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCGGCGATGTGGATGT 482840
Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232
||| || || || || ||||||||||| || |||||||||||||| || | ||| || |
Sbjct 482841 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 482900
Query 62233 TTTGTGCAATTTCCCA 62248
|||| | || |||||
Sbjct 482901 TTTGGGAGATCTCCCA 482916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629793871621920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |