Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq2493 116 5e-21
seq334 114 2e-20
seq890 111 2e-19
seq2246 84.2 3e-11
>seq2493
Length=4481176
Score = 116 bits (128), Expect = 5e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287
||||| |||||| || | |||| || | | || || ||||||||||| ||||| |||
Sbjct 3722904 TATTTTTTATTAAATGCCTCCAGAAAACGCAGCAAGTGTAAGAACAGATTTATGATGTCC 3722963
Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347
||||||| |||||| | || | | || |||||||| || ||||| || || || |
Sbjct 3722964 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGAGACAGCTTGTGCATCAGCAAA 3723023
Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407
|| |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| |
Sbjct 3723024 TGAGTGTCATAAATAATAAATCCACAGAACAAAAGAGCTCCAGCAGCAGCAAACACCAAC 3723083
Query 9408 TCCACTGTTTCACT 9421
|| | || |||||
Sbjct 3723084 TCTATCGTCTCACT 3723097
Score = 105 bits (116), Expect = 9e-18
Identities = 117/154 (76%), Gaps = 4/154 (3%)
Strand=Plus/Plus
Query 9450 AAAATTAAAATCCACAAAGT-AACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTT 9508
|||||||||| | ||| | |||| || |||||||||| ||| ||||| ||||||||
Sbjct 3724273 AAAATTAAAAAAAAAAAAATCAACATAC---CCTGCTCCAAATTTGCTGAAGTCTCTCTT 3724329
Query 9509 TGATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTG 9568
||| || | ||||||||||||| ||||||| || | || ||| || || || |||||
Sbjct 3724330 TGACTGCAAGGTATATGCAGTCAATCCAAGAAATACAGAAGCAGTAAGAATAAAGGCTTG 3724389
Query 9569 CATAACGACATGCACATCATAGAAAGTAACAACA 9602
|| ||||| |||||||||||| | || |||
Sbjct 3724390 CAAAACGATGGAGACATCATAGAAACTCACTACA 3724423
>seq334
Length=7684865
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||||||| || | ||| || ||||| |||||||| ||||||| || | ||||
Sbjct 6125973 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 6126032
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || ||||| || ||||||||||| |||||||| || || |||||||
Sbjct 6126033 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 6126092
Query 36300 C 36300
|
Sbjct 6126093 C 6126093
>seq890
Length=1787418
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| ||||| || || | ||| ||||| || || | ||| |
Sbjct 1673510 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCT 1673569
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 1673570 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1673629
Query 36300 CAATAAGTCTCTCTCC 36315
||| | |||||| ||
Sbjct 1673630 CAACCACTCTCTCACC 1673645
>seq2246
Length=973789
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| ||||| || ||||| || || || || || | || || || || ||||| |
Sbjct 482781 TCCAGCCGTAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCGGCGATGTGGATGT 482840
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
||| || || || || ||||||||||| || |||||||||||||| || | ||| || |
Sbjct 482841 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 482900
Query 65026 TTTGTGGAATTTCCCA 65041
|||| | || |||||
Sbjct 482901 TTTGGGAGATCTCCCA 482916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658148003339760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |