Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2493 116 5e-21 seq334 114 2e-20 seq890 111 2e-19 seq2246 84.2 3e-11 >seq2493 Length=4481176 Score = 116 bits (128), Expect = 5e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || | |||| || | | || || ||||||||||| ||||| ||| Sbjct 3722904 TATTTTTTATTAAATGCCTCCAGAAAACGCAGCAAGTGTAAGAACAGATTTATGATGTCC 3722963 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || ||||| || || || | Sbjct 3722964 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGAGACAGCTTGTGCATCAGCAAA 3723023 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 || |||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 3723024 TGAGTGTCATAAATAATAAATCCACAGAACAAAAGAGCTCCAGCAGCAGCAAACACCAAC 3723083 Query 9408 TCCACTGTTTCACT 9421 || | || ||||| Sbjct 3723084 TCTATCGTCTCACT 3723097 Score = 105 bits (116), Expect = 9e-18 Identities = 117/154 (76%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 9450 AAAATTAAAATCCACAAAGT-AACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTT 9508 |||||||||| | ||| | |||| || |||||||||| ||| ||||| |||||||| Sbjct 3724273 AAAATTAAAAAAAAAAAAATCAACATAC---CCTGCTCCAAATTTGCTGAAGTCTCTCTT 3724329 Query 9509 TGATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTG 9568 ||| || | ||||||||||||| ||||||| || | || ||| || || || ||||| Sbjct 3724330 TGACTGCAAGGTATATGCAGTCAATCCAAGAAATACAGAAGCAGTAAGAATAAAGGCTTG 3724389 Query 9569 CATAACGACATGCACATCATAGAAAGTAACAACA 9602 || ||||| |||||||||||| | || ||| Sbjct 3724390 CAAAACGATGGAGACATCATAGAAACTCACTACA 3724423 >seq334 Length=7684865 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | |||| Sbjct 6125973 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 6126032 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 6126033 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 6126092 Query 36300 C 36300 | Sbjct 6126093 C 6126093 >seq890 Length=1787418 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| || || | ||| | Sbjct 1673510 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCT 1673569 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 1673570 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1673629 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 1673630 CAACCACTCTCTCACC 1673645 >seq2246 Length=973789 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || || || || | || || || || ||||| | Sbjct 482781 TCCAGCCGTAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCGGCGATGTGGATGT 482840 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| || || || || ||||||||||| || |||||||||||||| || | ||| || | Sbjct 482841 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 482900 Query 65026 TTTGTGGAATTTCCCA 65041 |||| | || ||||| Sbjct 482901 TTTGGGAGATCTCCCA 482916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658148003339760