Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_003521.1 Length=241087 Score E Sequences producing significant alignments: (Bits) Value seq89 84.2 3e-11 >seq89 Length=20655 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 77350 CCGCCGGGCACCAGCAGGGTGGAGTAGCACAGGTTGTGGGCCATGATGATGGAGGGGTAG 77409 || ||||| ||||||||||| |||||||||||||||||| || |||||||| ||||| Sbjct 17819 CCCCCGGGGGGCAGCAGGGTGGTGTAGCACAGGTTGTGGGCGATCATGATGGACGGGTAC 17878 Query 77410 AGGCTGGCGAAGTCGAAGACCGCCACGGGGTCGTTGTAGTA 77450 ||| || |||||| | | || | ||| ||| |||||| Sbjct 17879 AGGGAGGAGAAGTCCAGGGTGGCGATGGGCACGTCGTAGTA 17919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771321339373680