Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq890 98.7 9e-16
seq334 96.9 3e-15
>seq890
Length=1787418
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|||||||| || || || || || || || || | || ||||| || || | || ||
Sbjct 1673512 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCTTC 1673571
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| |||||||||||||||||| ||||||||||| || || ||||| ||||| ||||| ||
Sbjct 1673572 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 1673631
Query 13295 ATCAACCTTTCACC 13308
| || || |||||
Sbjct 1673632 ACCACTCTCTCACC 1673645
>seq334
Length=7684865
Score = 96.9 bits (106), Expect = 3e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
||||||||||| || || || || ||||| || || || ||||| | |||| ||||||
Sbjct 6125975 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTTTC 6126034
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| |||||| || | ||||| || || ||||| || |||||||| || |||||||| |||
Sbjct 6126035 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGGCT 6126094
Query 13295 A 13295
|
Sbjct 6126095 A 6126095
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430966568669628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |