Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2317 163 7e-35
seq1378 132 1e-25
seq281 120 7e-22
seq890 113 1e-19
seq334 89.7 1e-12
>seq2317
Length=688720
Score = 163 bits (180), Expect = 7e-35
Identities = 134/163 (82%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||
Sbjct 295830 GCTTTATGGTGGTATTATGTCTCTAAAGGAATCGAATATTTGGATACAGTATTCTTCATT 295771
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | || |||||||||||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 295770 CTGAGGAAAAAATTTAATCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 295711
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| ||| | ||||| |||||||| ||| | ||||| |||||||
Sbjct 295710 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 295668
>seq1378
Length=1476964
Score = 132 bits (146), Expect = 1e-25
Identities = 124/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464
||||| || || || |||||||| || |||||||| || |||||||| || ||||| ||
Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664
Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524
||||| ||||| ||||| ||||| || | ||| || || || || ||||| || || ||
Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724
Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| ||||| || || || || || |||||||||||
Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 1379762
>seq281
Length=2586918
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || || || | || ||||| ||||| || || ||||||
Sbjct 2063480 ATCCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 2063539
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || ||||||||||| |||||||| || ||||||
Sbjct 2063540 GAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGA 2063599
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508
|| || ||||| || ||||| ||||| || || ||||| || | ||| || || || ||
Sbjct 2063600 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 2063658
>seq890
Length=1787418
Score = 113 bits (124), Expect = 1e-19
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 1673633 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 1673574
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||| || || || ||||| ||||| |||||||| || ||| | || ||||| ||
Sbjct 1673573 CTGAAGAAGAGGGGTCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 1673514
Query 269258 GA 269259
||
Sbjct 1673513 GA 1673512
>seq334
Length=7684865
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/121 (77%), Gaps = 1/121 (1%)
Strand=Plus/Minus
Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955
||||| | ||| |||| ||||||| ||||| || | ||||| | ||||| || || |
Sbjct 6127776 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCT 6127717
Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015
||||||| || || |||||||| |||||||| ||||||||||| | || || || || |
Sbjct 6127716 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACA 6127657
Query 269016 T 269016
|
Sbjct 6127656 T 6127656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151353936591912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |