Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2317 163 7e-35 seq1378 132 1e-25 seq281 120 7e-22 seq890 113 1e-19 seq334 89.7 1e-12 >seq2317 Length=688720 Score = 163 bits (180), Expect = 7e-35 Identities = 134/163 (82%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||| Sbjct 295830 GCTTTATGGTGGTATTATGTCTCTAAAGGAATCGAATATTTGGATACAGTATTCTTCATT 295771 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | || |||||||||||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 295770 CTGAGGAAAAAATTTAATCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 295711 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 295710 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 295668 >seq1378 Length=1476964 Score = 132 bits (146), Expect = 1e-25 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| || || || |||||||| || |||||||| || |||||||| || ||||| || Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||| ||||| ||||| ||||| || | ||| || || || || ||||| || || || Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| ||||| || || || || || ||||||||||| Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 1379762 >seq281 Length=2586918 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || ||||| ||||| || || |||||| Sbjct 2063480 ATCCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 2063539 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || ||||||||||| |||||||| || |||||| Sbjct 2063540 GAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGA 2063599 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| || ||||| ||||| || || ||||| || | ||| || || || || Sbjct 2063600 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 2063658 >seq890 Length=1787418 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 1673633 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 1673574 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || || || ||||| ||||| |||||||| || ||| | || ||||| || Sbjct 1673573 CTGAAGAAGAGGGGTCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 1673514 Query 269258 GA 269259 || Sbjct 1673513 GA 1673512 >seq334 Length=7684865 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| ||||| || | ||||| | ||||| || || | Sbjct 6127776 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCT 6127717 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| | || || || || | Sbjct 6127716 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACA 6127657 Query 269016 T 269016 | Sbjct 6127656 T 6127656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151353936591912