Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2570 95.1 6e-15 seq2308 87.8 9e-13 seq1644 84.2 1e-11 >seq2570 Length=8421365 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| |||||||||| | |||||||||| ||||||| ||||||||||||| Sbjct 395219 AACAAAAAACAAAATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 395278 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 395279 CACGCTCTAACCAACTGAGCTAACCGGCC 395307 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 407956 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 408015 Query 11528 CC 11529 || Sbjct 408016 CC 408017 >seq2308 Length=711728 Score = 87.8 bits (96), Expect = 9e-13 Identities = 90/117 (77%), Gaps = 5/117 (4%) Strand=Plus/Plus Query 11417 AAGAATCCAGGGAAATATAGAATTAATAAAA----AATCAAATTGGCCCATGAAAGGATC 11472 |||||| ||||||| | | || || |||| ||| || |||||| | ||||| Sbjct 610664 AAGAATG-AGGGAAAGAAAAAAGAAACAAAATACAAATGAATGTGGCCCGTACGGGGATC 610722 Query 11473 GAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||| ||||||||||||| ||||||| |||||||||||||| |||| Sbjct 610723 GAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 610779 >seq1644 Length=1239378 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 17280 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 17221 Query 11528 CCG 11530 ||| Sbjct 17220 CCG 17218 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261481594611064