Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq2570 95.1 6e-15
seq2308 87.8 9e-13
seq1644 84.2 1e-11
>seq2570
Length=8421365
Score = 95.1 bits (104), Expect = 6e-15
Identities = 74/89 (83%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||||| |||||||||| | |||||||||| ||||||| |||||||||||||
Sbjct 395219 AACAAAAAACAAAATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 395278
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||| |||||||||||||| ||||
Sbjct 395279 CACGCTCTAACCAACTGAGCTAACCGGCC 395307
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 407956 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 408015
Query 11528 CC 11529
||
Sbjct 408016 CC 408017
>seq2308
Length=711728
Score = 87.8 bits (96), Expect = 9e-13
Identities = 90/117 (77%), Gaps = 5/117 (4%)
Strand=Plus/Plus
Query 11417 AAGAATCCAGGGAAATATAGAATTAATAAAA----AATCAAATTGGCCCATGAAAGGATC 11472
|||||| ||||||| | | || || |||| ||| || |||||| | |||||
Sbjct 610664 AAGAATG-AGGGAAAGAAAAAAGAAACAAAATACAAATGAATGTGGCCCGTACGGGGATC 610722
Query 11473 GAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 610723 GAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 610779
>seq1644
Length=1239378
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 17280 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 17221
Query 11528 CCG 11530
|||
Sbjct 17220 CCG 17218
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261481594611064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |