Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq302 179 5e-40
seq2371 113 6e-20
>seq302
Length=2538925
Score = 179 bits (198), Expect = 5e-40
Identities = 218/297 (73%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| |||| || ||||| || || |||||| | |||| || ||| | || ||
Sbjct 2286275 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGAGAGGCCG 2286334
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||||||| | || ||||| | || || ||||||||||| |||||||| | ||||
Sbjct 2286335 TGTTGACGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 2286394
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| |||| |||| || || || ||||| || || ||||||| ||| | |||
Sbjct 2286395 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATCTCCACCATGG 2286454
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || |||||||| ||| |||||||| ||||||| | || | ||||| |||||
Sbjct 2286455 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 2286514
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| ||||||||||| || || || || || || || || || ||||||||||
Sbjct 2286515 TGGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCATCTCTTTTTCTCCTG 2286571
Score = 98.7 bits (108), Expect = 1e-15
Identities = 174/254 (69%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| ||||| | ||||| || | |||||| || || || ||||| ||| || || ||
Sbjct 2288206 TCACCGATCAGAATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 2288265
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
| | || || || ||||| || | |||||| || | |||||||| || |||||||||
Sbjct 2288266 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATC 2288325
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789
|| || || |||||||| || || |||| || || || | | |||| | ||||||
Sbjct 2288326 ATCAGCCCTGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGC 2288385
Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849
|| | || || || | ||| | |||| || |||| || || ||||||||
Sbjct 2288386 ACGTGCGGTGGGTACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCT 2288445
Query 9850 CCGTCAATAATCTG 9863
|| || || |||||
Sbjct 2288446 CCATCGATCATCTG 2288459
Score = 87.8 bits (96), Expect = 3e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | |||||||| || || | || || || || | |||| |
Sbjct 2290056 TCACCTTTAACACCCATTGGAGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 2290115
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|| ||||| |||||||| |||||||||||||| ||| |||||| ||||| |
Sbjct 2290116 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTGTAGTCACTATTGTAAGTT 2290175
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| |||||||||||||| | ||||| |||||
Sbjct 2290176 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGAA 2290208
>seq2371
Length=4823497
Score = 113 bits (124), Expect = 6e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| || ||| |||| || |||| || || || |||||||||||||| | ||||
Sbjct 3203877 TCTTCACAATCTCAAAGCCAGTAGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 3203818
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| || | | || || || |||||||| ||||| || | ||| | ||||
Sbjct 3203817 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 3203758
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || ||| ||||||| |||| || || | || || || | ||| |||||||
Sbjct 3203757 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCA 3203698
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
||| || |||||||| || ||
Sbjct 3203697 GAGCATCAATGTCTCCATACAG 3203676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708498106328160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |