Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq302 179 5e-40 seq2371 113 6e-20 >seq302 Length=2538925 Score = 179 bits (198), Expect = 5e-40 Identities = 218/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| |||| || ||||| || || |||||| | |||| || ||| | || || Sbjct 2286275 GGAAGGCGGTGAAGGGACAGCCCTTCACGTTGTTGCAGATGAGCTTCTGCAGAGAGGCCG 2286334 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| | || ||||| | || || ||||||||||| |||||||| | |||| Sbjct 2286335 TGTTGACGATGTCGAAGCCCACCTTGCCCCCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 2286394 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| |||| || || || ||||| || || ||||||| ||| | ||| Sbjct 2286395 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAATGGTGCCCCCATCTCCACCATGG 2286454 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || |||||||| ||| |||||||| ||||||| | || | ||||| ||||| Sbjct 2286455 TCTCGCCAAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 2286514 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||||||||| || || || || || || || || || |||||||||| Sbjct 2286515 TGGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCATCTCTTTTTCTCCTG 2286571 Score = 98.7 bits (108), Expect = 1e-15 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | ||||| || | |||||| || || || ||||| ||| || || || Sbjct 2288206 TCACCGATCAGAATGAGCCGGGCGGTCTGGAAGAGCTGCTCGTCGTCCCACTCGGGGTGC 2288265 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | | || || || ||||| || | |||||| || | |||||||| || ||||||||| Sbjct 2288266 TGGTGCTTGAGCACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATC 2288325 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || || || |||||||| || || |||| || || || | | |||| | |||||| Sbjct 2288326 ATCAGCCCTGGCACCAGCCCGAACACCTCCTGCCCCACGGAGAAGCGCAGGTGCTCGGGC 2288385 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | || || || | ||| | |||| || |||| || || |||||||| Sbjct 2288386 ACGTGCGGTGGGTACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCT 2288445 Query 9850 CCGTCAATAATCTG 9863 || || || ||||| Sbjct 2288446 CCATCGATCATCTG 2288459 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | |||||||| || || | || || || || | |||| | Sbjct 2290056 TCACCTTTAACACCCATTGGAGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 2290115 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| |||||||| |||||||||||||| ||| |||||| ||||| | Sbjct 2290116 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTGTAGTCACTATTGTAAGTT 2290175 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || |||||||||||||| | ||||| ||||| Sbjct 2290176 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGAA 2290208 >seq2371 Length=4823497 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || || || |||||||||||||| | |||| Sbjct 3203877 TCTTCACAATCTCAAAGCCAGTAGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGGG 3203818 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| || | | || || || |||||||| ||||| || | ||| | |||| Sbjct 3203817 AGCAGATGGGATTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATGC 3203758 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| ||||||| |||| || || | || || || | ||| ||||||| Sbjct 3203757 TTTCCCCAAAAATGCCGTTGGGTTGGGGTTTCTCGAGCAGCAAGCCTGGGTAAAACTCCA 3203698 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 3203697 GAGCATCAATGTCTCCATACAG 3203676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708498106328160