Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq281 104 2e-17 seq1378 91.5 1e-13 >seq281 Length=2586918 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || |||||||| || | ||| || || | ||| | Sbjct 2063267 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCA 2063326 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || ||||||| | || ||||| ||||| ||||| || || || Sbjct 2063327 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTA 2063386 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | | |||||| | | || || |||| |||||| Sbjct 2063387 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATG 2063446 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || ||||| || |||||||| Sbjct 2063447 GTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || || ||||||| | || ||||| || ||||| || ||||| || Sbjct 2064617 ATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTT 2064676 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || | | |||||| | | || || |||| ||||| Sbjct 2064677 GTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGAT 2064736 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || ||||| || || |||||||||||||||||| Sbjct 2064737 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2064773 >seq1378 Length=1476964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || ||||| || ||||| ||| Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || || ||||| ||| |||||| | | || || |||| |||||| Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| || || || || ||||||||||| Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 1379759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448274310629040