Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2781 127 3e-25
seq623 120 5e-23
seq840 102 1e-17
seq37 91.5 2e-14
>seq2781
Length=3610385
Score = 127 bits (140), Expect = 3e-25
Identities = 174/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 1300836 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1300895
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 1300896 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1300955
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 1300956 GCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1301015
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 1301016 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1301075
Query 16672 CCG 16674
||
Sbjct 1301076 TCG 1301078
Score = 127 bits (140), Expect = 3e-25
Identities = 174/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 1325477 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1325536
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 1325537 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1325596
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 1325597 GCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1325656
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 1325657 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1325716
Query 16672 CCG 16674
||
Sbjct 1325717 TCG 1325719
Score = 127 bits (140), Expect = 3e-25
Identities = 202/288 (70%), Gaps = 4/288 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 1333729 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1333670
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || || ||||| |||| || | |||| || ||||
Sbjct 1333669 CCGCCGCCTGGCTCGGCGCGGCGGCGTTAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1333610
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 1333609 GCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1333550
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 1333549 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1333490
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA--TCTTCTAATCAAACTTCG 16717
|| | | || ||||| || | ||| |||||| || ||||||
Sbjct 1333489 TCGCACTCTCTACGGTTTCGGCGGCTAAAGCCTTCTATTC--ACTTCG 1333444
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||||| || ||||||||||| || ||
Sbjct 1305038 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1304979
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 1304978 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1304919
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| || |||| || || || ||| || ||
Sbjct 1304918 GCGCGGTGTGCTCAAGGTCTTCCTGGAGAATGTGATCCGCGACGCCGTCACCTACACGGA 1304859
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 1304858 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1304799
Query 16672 CCG 16674
||
Sbjct 1304798 TCG 1304796
Score = 123 bits (136), Expect = 4e-24
Identities = 173/243 (71%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || || ||||| || ||||||||||| || ||
Sbjct 1353530 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 1353471
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 1353470 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1353411
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| ||||||| ||| ||| |||| || || || ||| || ||
Sbjct 1353410 GCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1353351
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || | ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 1353350 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1353291
Query 16672 CCG 16674
||
Sbjct 1353290 TCG 1353288
>seq623
Length=1990752
Score = 120 bits (132), Expect = 5e-23
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || | || || || || |||||||| || ||||||||||| || ||
Sbjct 1650517 CGCTAAGCGCCACCACAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1650576
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| |||||||||| || || || |||||||| |||| || || |||| || ||||
Sbjct 1650577 CCGCCGTCTGGCTCAGCGCGGCGGCGTCAAGCGCATCTCGGGGTTCATCTACGAGGAGAC 1650636
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | || ||||||| | | ||| |||||||| || || ||| || |
Sbjct 1650637 GCGCGGTGTGCTTAAAGTCTTCCTAGAAAACGTAATCCATGACGCCGTCACCTACACGGG 1650696
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATG 16642
|||||| || | ||||| ||||| |||||
Sbjct 1650697 GCACGCCAAGAGGAAGACGGTCACGGCCATG 1650727
>seq840
Length=2998
Score = 102 bits (112), Expect = 1e-17
Identities = 159/226 (70%), Gaps = 1/226 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || ||| |||| || ||||||||||| || ||
Sbjct 2315 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACCTCCAGGGCATCACCAAGCCGGCCAT 2374
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || ||||||| |||| || || |||| || ||||
Sbjct 2375 CCGCCGCCTGGCTCGGCGCGGAGGCGTCAAGCACATCTCGGGGTTCATCTACGAGGAGAC 2434
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| ||||| | ||| | ||||| || | ||| |||| | || || ||| || ||
Sbjct 2435 GCGCGATGTGCTCAAGGTTTTCCTGAAAAACGTGATCCGCAACGCCATCACCTACACGGA 2494
Query 16612 GCACG-CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
||||| | ||| | ||||| || | |||| || | ||||| ||
Sbjct 2495 GCACGCCAAAAAGAAAGACAGTTATAGCCATAGACGTAGTCTACGC 2540
>seq37
Length=2965776
Score = 91.5 bits (100), Expect = 2e-14
Identities = 148/212 (70%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || || | | || | || |||||||| || ||||||||||| || ||
Sbjct 808286 CGCCAAGCGCCACCGTAAAGTGCTGCACGACAACATCCAGGGCATCACCAAGCCGGCCAT 808227
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 808226 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 808167
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
| | ||| | ||| |||| | ||| ||| |||| || | || ||| || ||
Sbjct 808166 GTGCGGTGTGCTCAAGGTCTTTTTGGAGAACGTGATCCGCGACACCGTCACCTACACGGA 808107
Query 16612 GCACGCTAA-ACGTAAGACTGTCACCTCCATG 16642
| |||| || | | ||||| ||||| |||||
Sbjct 808106 GAACGCCAAGAAGAAAGACAGTCACGGCCATG 808075
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79072444278702
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |