Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2781 127 3e-25 seq623 120 5e-23 seq840 102 1e-17 seq37 91.5 2e-14 >seq2781 Length=3610385 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1300836 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1300895 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 1300896 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1300955 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 1300956 GCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1301015 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 1301016 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1301075 Query 16672 CCG 16674 || Sbjct 1301076 TCG 1301078 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1325477 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1325536 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 1325537 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1325596 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 1325597 GCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1325656 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 1325657 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1325716 Query 16672 CCG 16674 || Sbjct 1325717 TCG 1325719 Score = 127 bits (140), Expect = 3e-25 Identities = 202/288 (70%), Gaps = 4/288 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1333729 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1333670 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || || ||||| |||| || | |||| || |||| Sbjct 1333669 CCGCCGCCTGGCTCGGCGCGGCGGCGTTAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1333610 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 1333609 GCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1333550 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 1333549 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1333490 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA--TCTTCTAATCAAACTTCG 16717 || | | || ||||| || | ||| |||||| || |||||| Sbjct 1333489 TCGCACTCTCTACGGTTTCGGCGGCTAAAGCCTTCTATTC--ACTTCG 1333444 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1305038 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1304979 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 1304978 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1304919 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| || |||| || || || ||| || || Sbjct 1304918 GCGCGGTGTGCTCAAGGTCTTCCTGGAGAATGTGATCCGCGACGCCGTCACCTACACGGA 1304859 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 1304858 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1304799 Query 16672 CCG 16674 || Sbjct 1304798 TCG 1304796 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || || ||||| || ||||||||||| || || Sbjct 1353530 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAATATCCAGGGCATCACCAAGCCGGCCAT 1353471 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 1353470 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 1353411 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 1353410 GCGCGGTGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 1353351 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 1353350 GCACGCCAAGAGGAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTTAAGCGCCAGGG 1353291 Query 16672 CCG 16674 || Sbjct 1353290 TCG 1353288 >seq623 Length=1990752 Score = 120 bits (132), Expect = 5e-23 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || | || || || || |||||||| || ||||||||||| || || Sbjct 1650517 CGCTAAGCGCCACCACAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 1650576 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||||| || || || |||||||| |||| || || |||| || |||| Sbjct 1650577 CCGCCGTCTGGCTCAGCGCGGCGGCGTCAAGCGCATCTCGGGGTTCATCTACGAGGAGAC 1650636 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | || ||||||| | | ||| |||||||| || || ||| || | Sbjct 1650637 GCGCGGTGTGCTTAAAGTCTTCCTAGAAAACGTAATCCATGACGCCGTCACCTACACGGG 1650696 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATG 16642 |||||| || | ||||| ||||| ||||| Sbjct 1650697 GCACGCCAAGAGGAAGACGGTCACGGCCATG 1650727 >seq840 Length=2998 Score = 102 bits (112), Expect = 1e-17 Identities = 159/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || ||| |||| || ||||||||||| || || Sbjct 2315 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACCTCCAGGGCATCACCAAGCCGGCCAT 2374 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || ||||||| |||| || || |||| || |||| Sbjct 2375 CCGCCGCCTGGCTCGGCGCGGAGGCGTCAAGCACATCTCGGGGTTCATCTACGAGGAGAC 2434 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||||| | ||| | ||||| || | ||| |||| | || || ||| || || Sbjct 2435 GCGCGATGTGCTCAAGGTTTTCCTGAAAAACGTGATCCGCAACGCCATCACCTACACGGA 2494 Query 16612 GCACG-CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| | ||| | ||||| || | |||| || | ||||| || Sbjct 2495 GCACGCCAAAAAGAAAGACAGTTATAGCCATAGACGTAGTCTACGC 2540 >seq37 Length=2965776 Score = 91.5 bits (100), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || | || |||||||| || ||||||||||| || || Sbjct 808286 CGCCAAGCGCCACCGTAAAGTGCTGCACGACAACATCCAGGGCATCACCAAGCCGGCCAT 808227 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 808226 CCGCCGCCTGGCTCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 808167 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| | ||| |||| | ||| ||| |||| || | || ||| || || Sbjct 808166 GTGCGGTGTGCTCAAGGTCTTTTTGGAGAACGTGATCCGCGACACCGTCACCTACACGGA 808107 Query 16612 GCACGCTAA-ACGTAAGACTGTCACCTCCATG 16642 | |||| || | | ||||| ||||| ||||| Sbjct 808106 GAACGCCAAGAAGAAAGACAGTCACGGCCATG 808075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072444278702