Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq890 123 3e-23
seq334 120 4e-22
seq2246 86.0 8e-12
>seq890
Length=1787418
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| ||||| ||||| ||||| || || | ||| ||||| || || | ||| |
Sbjct 1673510 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGACCCCTCTTCT 1673569
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||||||||| | ||| || || || ||||||||||| ||||| |||||||||||||
Sbjct 1673570 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1673629
Query 33446 CAATAAGTCTCTCTCC 33461
||| | |||||| ||
Sbjct 1673630 CAACCACTCTCTCACC 1673645
>seq334
Length=7684865
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| |||||||| || ||||| || ||||| |||||||| ||||||| || | ||||
Sbjct 6125973 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 6126032
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| |||||||| || || || || || |||||||||||||||||||| || || |||||||
Sbjct 6126033 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAGG 6126092
Query 33446 C 33446
|
Sbjct 6126093 C 6126093
Score = 82.4 bits (90), Expect = 1e-10
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057
||||| |||||||| | || |||||||| || || || || || ||||| || || |||
Sbjct 6124749 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCT 6124808
Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092
|||| || || ||||||||||| ||||| |||||
Sbjct 6124809 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 6124843
>seq2246
Length=973789
Score = 86.0 bits (94), Expect = 8e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274
|||||| ||||| ||||||||||| ||||| || || | || || || || | || ||
Sbjct 491558 CACTCGCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTAGCTCGCTG 491617
Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334
|| || || ||||| ||||| || | || |||||| | | || || | ||||||||
Sbjct 491618 CTCTTCTTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 491677
Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361
|||| ||| ||||| | | | |||||
Sbjct 491678 CTCCAGGTAGATGGCAAAAGCCCCAGG 491704
Score = 84.2 bits (92), Expect = 3e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| ||||| || ||||| || || || || || | || || || || ||||| |
Sbjct 482781 TCCAGCCGTAGAAGTGCATGCTGGTGAGCTTCCCGTAGTTGGGCTCGGCGATGTGGATGT 482840
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
||| || || || || ||||||||||| || |||||||||||||| || | ||| || |
Sbjct 482841 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCAGCCATCTTCAGGATGGTTT 482900
Query 62182 TTTGTGGAATTTCCCA 62197
|||| | || |||||
Sbjct 482901 TTTGGGAGATCTCCCA 482916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622923730464240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |