Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1378 91.5 1e-13 >seq1378 Length=1476964 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || || || | ||||| || | || ||| | || || ||| || Sbjct 1379762 AAAATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 1379703 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | |||||| ||||| ||||| |||||||| ||||| || Sbjct 1379702 AGTGACACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGAC 1379643 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || ||||| ||||| | | |||||||| || ||||| Sbjct 1379642 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 1379605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429920207107170