Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq2246 118 1e-21
seq281 102 8e-17
>seq2246
Length=973789
Score = 118 bits (130), Expect = 1e-21
Identities = 104/130 (80%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727
|||||| |||||||||| ||||| ||||| || |||||||| ||||| || ||||| |
Sbjct 490309 TGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 490368
Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787
| || ||||||||||| | |||||||||||||||||| || ||||||||| ||| |
Sbjct 490369 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCGGTCTGGG 490428
Query 145788 TCTCCACGAT 145797
||| | |||
Sbjct 490429 ACTCGATGAT 490438
>seq281
Length=2586918
Score = 102 bits (112), Expect = 8e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065
||||||| | | |||||||| | || | ||| || ||||| || |||||||| ||
Sbjct 2063253 AGCCACCCCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 2063312
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| ||||||| ||||| ||||||||||| || |||| | | ||||||||| || |
Sbjct 2063313 AGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGG 2063372
Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185
| ||||| || || || ||| || ||||| | || | || || ||| ||| |
Sbjct 2063373 GAATTCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCA 2063432
Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || || || || ||||||||||||||
Sbjct 2063433 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| | || |||||||| | || | ||| || ||||| || |||||||| ||
Sbjct 2063483 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 2063542
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||||| || || ||||||||||| || | || | | ||||||||| ||||||
Sbjct 2063543 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 2063602
Query 131128 ATTCCTTCTTTGTC 131141
|| ||||| |||||
Sbjct 2063603 ATACCTTCCTTGTC 2063616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471995016917760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |