Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1378 123 5e-23 seq281 123 5e-23 seq2411 93.3 8e-14 seq283 87.8 3e-12 seq2589 86.0 1e-11 seq334 84.2 4e-11 >seq1378 Length=1476964 Score = 123 bits (136), Expect = 5e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| || || || || || || || ||||| || || |||||||||||| Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || ||||| || ||||| |||||||||||| | || || || | ||||||| Sbjct 1379665 TCCTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1379724 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || || || |||||||||||||| ||||||||| Sbjct 1379725 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATT 1379760 >seq281 Length=2586918 Score = 123 bits (136), Expect = 5e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||| || || |||||||| || || ||||| || | | Sbjct 2063492 AGGCGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 2063551 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || || || |||||| Sbjct 2063552 CCATCTTCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCC 2063611 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||||| || ||||| ||||| || ||| |||||||| Sbjct 2063612 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC 2063649 Score = 104 bits (114), Expect = 4e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | |||||| || || || || || || || ||||| || || Sbjct 2064606 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 2064665 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||| || || |||||||| | || || Sbjct 2064666 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACC 2064725 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| || || |||||||| Sbjct 2064726 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2064772 >seq2411 Length=466381 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || ||||| || || ||| |||||||||||| | || || || Sbjct 42734 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCG 42793 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 42794 AGGGTGATGGTTTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 42837 >seq283 Length=10291 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 84452 GAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 84511 |||||||||| |||||||||||||||||| || ||||||| || |||||||||||| Sbjct 785 GAGCGCCCGGCTAGCTCAGTCGGCAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 844 Query 84512 GAGCCCCACATCGGGC 84527 ||||||||| | |||| Sbjct 845 GAGCCCCACGTTGGGC 860 >seq2589 Length=201166 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 ||||||||| |||||||||||||||||| || ||||||| || ||||||||||||| Sbjct 147576 AGCGCCCGGCTAGCTCAGTCGGCAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 147635 Query 84513 AGCCCCACATCGGGC 84527 |||||||| | |||| Sbjct 147636 AGCCCCACGTTGGGC 147650 >seq334 Length=7684865 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 6128462 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 6128521 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 6128522 TACTGGATGGGGAA 6128535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921587677876080