Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2246 158 2e-33 seq890 91.5 3e-13 >seq2246 Length=973789 Score = 158 bits (174), Expect = 2e-33 Identities = 169/221 (76%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || ||||||||||||||| ||||| |||||| |||||| || | | ||||||| Sbjct 486980 CACCCCCTTGCTGACGGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCGGGCCAG 487039 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 || ||||| | || ||||| |||||||||||||||||||||| || ||| | | | Sbjct 487040 CTCGCAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGA-GGC 487098 Query 244438 GC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496 || | |||| | ||| ||||||| | ||| | |||||| |||||||||| |||| Sbjct 487099 GCTGCGCCTCGGCGCTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCT 487158 Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 ||||||||||||||||||| | ||| ||| |||||||||| Sbjct 487159 GCACGCCGATGCCGATGGGCCGGTGCCGCCGGTTGGAGCGC 487199 Score = 140 bits (154), Expect = 6e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||||||| | ||||||| | || ||||||||||| ||||| ||||||||||||| Sbjct 490291 CCACCTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 490350 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 490351 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 490410 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || |||||| ||||| ||| || | | |||||| | | ||||| ||| || Sbjct 490411 TGCCAGTCTCGGTCTGGGACTCGATGATGGCATACCAGAGCTGCTGGGCCTTCACCACCC 490470 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 490471 TGCGCACGCGGCCCTGCCGCTCGTAGC 490497 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || ||||||||||| || ||| |||||||| | | |||||| || Sbjct 491564 CTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTAGCTCGCTGCTCTTC 491623 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 || ||||||||| ||| |||| || ||||||| ||| | |||||| ||||||| Sbjct 491624 TTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAG 491683 Query 245128 GTAGA 245132 ||||| Sbjct 491684 GTAGA 491688 >seq890 Length=1787418 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 1673645 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 1673586 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || || ||||| ||| || ||| ||| |||||| ||| | || ||||| || ||||| Sbjct 1673585 GCTATATTTTGGCTGAAGAAG-AGGGGTCTGATGCCTGGATTGACTTTCTCCAATGAACT 1673527 Query 42815 CATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 1673526 TATTAGCAGAGATGAGG 1673510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944303622020640