Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2246 158 2e-33
seq890 91.5 3e-13
>seq2246
Length=973789
Score = 158 bits (174), Expect = 2e-33
Identities = 169/221 (76%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377
|| ||||||||||||||| ||||| |||||| |||||| || | | |||||||
Sbjct 486980 CACCCCCTTGCTGACGGGCGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCGGGCCAG 487039
Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437
|| ||||| | || ||||| |||||||||||||||||||||| || ||| | | |
Sbjct 487040 CTCGCAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGTTGA-GGC 487098
Query 244438 GC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCT 244496
|| | |||| | ||| ||||||| | ||| | |||||| |||||||||| ||||
Sbjct 487099 GCTGCGCCTCGGCGCTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCAGGCCCT 487158
Query 244497 GCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537
||||||||||||||||||| | ||| ||| ||||||||||
Sbjct 487159 GCACGCCGATGCCGATGGGCCGGTGCCGCCGGTTGGAGCGC 487199
Score = 140 bits (154), Expect = 6e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763
||||||||||| | ||||||| | || ||||||||||| ||||| |||||||||||||
Sbjct 490291 CCACCTCCTCCTTGCTGGTGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 490350
Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823
||||||||| ||| || ||| ||| |||||||| |||||||||||||||| ||||
Sbjct 490351 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 490410
Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883
|| |||||| ||||| ||| || | | |||||| | | ||||| ||| ||
Sbjct 490411 TGCCAGTCTCGGTCTGGGACTCGATGATGGCATACCAGAGCTGCTGGGCCTTCACCACCC 490470
Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910
|||| | ||||| ||||||||
Sbjct 490471 TGCGCACGCGGCCCTGCCGCTCGTAGC 490497
Score = 95.1 bits (104), Expect = 2e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067
|| ||||||||| || ||||||||||| || ||| |||||||| | | |||||| ||
Sbjct 491564 CTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTAGCTCGCTGCTCTTC 491623
Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127
|| ||||||||| ||| |||| || ||||||| ||| | |||||| |||||||
Sbjct 491624 TTTCCCTGTGTTCTTCTTCAAGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGCTCCAG 491683
Query 245128 GTAGA 245132
|||||
Sbjct 491684 GTAGA 491688
>seq890
Length=1787418
Score = 91.5 bits (100), Expect = 3e-13
Identities = 104/137 (76%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| ||||| |||| |||||| | || || || ||||||||||| ||||| |||| ||
Sbjct 1673645 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 1673586
Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814
| || || ||||| ||| || ||| ||| |||||| ||| | || ||||| || |||||
Sbjct 1673585 GCTATATTTTGGCTGAAGAAG-AGGGGTCTGATGCCTGGATTGACTTTCTCCAATGAACT 1673527
Query 42815 CATCAGCAGGGACGAGG 42831
|| ||||| || ||||
Sbjct 1673526 TATTAGCAGAGATGAGG 1673510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944303622020640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |