Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq281 131 2e-25
seq1378 100 3e-16
>seq281
Length=2586918
Score = 131 bits (144), Expect = 2e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || ||||| || || |||||||| || | || ||||||| | ||
Sbjct 2063270 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCC 2063329
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || |||| ||||||||| || |||||||| || || ||
Sbjct 2063330 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCC 2063389
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || |||| || ||||| || | || | ||||
Sbjct 2063390 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 2063449
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || |||||||| |||||
Sbjct 2063450 TTGCCAGTCAGGGTCTTCACGAAAATCTGCAT 2063481
Score = 107 bits (118), Expect = 2e-18
Identities = 118/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || ||||| || || |||||||| || | || ||||||| | |||
Sbjct 2063498 AGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 2063557
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| |||| |||| ||||||||| ||||| || ||||| || ||
Sbjct 2063558 TCCAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCC 2063617
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGG 64388
|| || || ||| ||| ||| | || |||| ||
Sbjct 2063618 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGG 2063654
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 64279 GGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338
||||||| | || || ||||||||||| ||| | || |||| ||||||||| ||||| ||
Sbjct 2064608 GGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGAT 2064667
Query 64339 TCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398
||||| || || || || || ||| ||| || | || |||| || ||||| ||
Sbjct 2064668 CCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCCACCTC 2064727
Query 64399 TACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
| || | ||||||||| |||| || || || || || ||||| ||
Sbjct 2064728 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 2064775
>seq1378
Length=1476964
Score = 100 bits (110), Expect = 3e-16
Identities = 119/159 (75%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348
||||| ||||||||||| ||| | || |||| ||||||||| ||||| || ||||| ||
Sbjct 1379605 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1379664
Query 64349 TCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407
|| || | | || ||||| ||| ||| | || |||| || || || || | || |
Sbjct 1379665 TCCTGGA-TCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGAT 1379723
Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||||||| |||| || || ||||| || ||||||||
Sbjct 1379724 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATTTT 1379762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499625975882160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |