Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017- 06-19] 3,014 sequences; 1,060,169,706 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2246 91.5 1e-13 >seq2246 Length=973789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||| | ||||||||||| ||| ||||||||||| || ||| ||||| || ||||| | Sbjct 490309 TGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 490368 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 153752 |||| || | ||||| | ||| ||| |||||||||| || ||| |||||| Sbjct 490369 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCG 490421 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 153301 GGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTAT 153360 ||||||| |||||||| ||||| || || || ||||| ||||| ||| ||| || | | Sbjct 487033 GGGCCAGCTCGCAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGT 487092 Query 153361 TGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCA 153420 |||| ||| || ||||||| | || | | || || | ||||||||||||| Sbjct 487093 TGAGGCGCTGCGCCTCGGCGCTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCA 487152 Query 153421 GACCCTGGATACCGACGCCGATGGGTCGATGC 153452 | ||||| | |||| ||||||||| || ||| Sbjct 487153 GGCCCTGCACGCCGATGCCGATGGGCCGGTGC 487184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496243703314080