Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lonchura_20striata_20domestica_20[refseq_20GCF_5F002197715.1_202017-
06-19] 3,014 sequences; 1,060,169,706 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2246 91.5 1e-13
>seq2246
Length=973789
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699
|||| | ||||||||||| ||| ||||||||||| || ||| ||||| || ||||| |
Sbjct 490309 TGTATTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 490368
Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 153752
|||| || | ||||| | ||| ||| |||||||||| || ||| ||||||
Sbjct 490369 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCG 490421
Score = 86.0 bits (94), Expect = 6e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 153301 GGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTAT 153360
||||||| |||||||| ||||| || || || ||||| ||||| ||| ||| || | |
Sbjct 487033 GGGCCAGCTCGCAGCTGGCCTCCAGGGCCCCGTAGTAGATGGTCTCGAAGATGTGCTGGT 487092
Query 153361 TGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCA 153420
|||| ||| || ||||||| | || | | || || | |||||||||||||
Sbjct 487093 TGAGGCGCTGCGCCTCGGCGCTCTCAAAGGGGAACCTCATGAGGATGAAGGCGTCGGCCA 487152
Query 153421 GACCCTGGATACCGACGCCGATGGGTCGATGC 153452
| ||||| | |||| ||||||||| || |||
Sbjct 487153 GGCCCTGCACGCCGATGCCGATGGGCCGGTGC 487184
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496243703314080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |